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Mrps10 mitochondrial ribosomal protein S10 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363187, updated on 4-Apr-2024

Summary

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Official Symbol
Mrps10provided by RGD
Official Full Name
mitochondrial ribosomal protein S10provided by RGD
Primary source
RGD:1311516
See related
Ensembl:ENSRNOG00000022609 AllianceGenome:RGD:1311516
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ac1179
Summary
Predicted to be part of mitochondrial small ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPS10 (mitochondrial ribosomal protein S10). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Muscle (RPKM 93.8), Heart (RPKM 90.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
9q12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (21112549..21122461, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (13614897..13624819, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (15637427..15651154, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene guanylate cyclase activator 1A Neighboring gene guanylate cyclase activator 1B Neighboring gene transcriptional regulating factor 1 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Ribosome. The structure of the human mitochondrial ribosome. Amunts A, et al. Science, 2015 Apr 3. PMID 25838379, Free PMC Article
  2. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of mitochondrial small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
  
part_of mitochondrial small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein uS10m
Names
28S ribosomal protein S10, mitochondrial
MRP-S10
S10mt
liver regeneration-related protein LRRG099
NP_001376181.1
XP_006244527.1
XP_038939741.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001389252.3 → NP_001376181.1  small ribosomal subunit protein uS10m

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    A0A0G2K7L0, A0A8I6ALP1, A6JIK7
    Related
    ENSRNOP00000094901.1, ENSRNOT00000116536.1
    Conserved Domains (1) summary
    pfam00338
    Location:78 → 173
    Ribosomal_S10; Ribosomal protein S10p/S20e

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    21112549..21122461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006244465.5 → XP_006244527.1  small ribosomal subunit protein uS10m isoform X1

    UniProtKB/TrEMBL
    A0A0G2K7L0
    Conserved Domains (1) summary
    pfam00338
    Location:77 → 171
    Ribosomal_S10; Ribosomal protein S10p/S20e

  2. XM_039083813.2 → XP_038939741.1  small ribosomal subunit protein uS10m isoform X2

    UniProtKB/TrEMBL
    A0A0G2K7L0
    Conserved Domains (1) summary
    pfam00338
    Location:75 → 170
    Ribosomal_S10; Ribosomal protein S10p/S20e

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001008859.1: Suppressed sequence

    Description
    NM_001008859.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7TQ82.1 GenPept UniProtKB/Swiss-Prot:Q7TQ82

Gene LinkOut

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