Display Settings:

Format

Send to:

Choose Destination

Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363002, updated on 18-Oct-2014
Official Symbol
Smarcd1provided by RGD
Official Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1provided by RGD
Primary source
RGD:1305406
See related
Ensembl:ENSRNOG00000034268
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
See Smarcd1 in MapViewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (141356185..141366725)
104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (115860833..115871373)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene Rac GTPase-activating protein 1 Neighboring gene acid-sensing (proton-gated) ion channel 1 Neighboring gene glycerol-3-phosphate dehydrogenase 1 (soluble) Neighboring gene cytochrome c oxidase assembly protein 14

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
chromatin binding IDA
Inferred from Direct Assay
more info
 
protein complex scaffold IEA
Inferred from Electronic Annotation
more info
 
protein complex scaffold ISO
Inferred from Sequence Orthology
more info
 
receptor binding IPI
Inferred from Physical Interaction
more info
 
Process Evidence Code Pubs
cellular response to fatty acid IEP
Inferred from Expression Pattern
more info
 
chromatin remodeling ISO
Inferred from Sequence Orthology
more info
 
chromatin-mediated maintenance of transcription IEA
Inferred from Electronic Annotation
more info
 
chromatin-mediated maintenance of transcription ISO
Inferred from Sequence Orthology
more info
 
nucleosome disassembly IEA
Inferred from Electronic Annotation
more info
 
nucleosome disassembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 
SWI/SNF complex ISO
Inferred from Sequence Orthology
more info
 
nBAF complex IEA
Inferred from Electronic Annotation
more info
 
nBAF complex ISO
Inferred from Sequence Orthology
more info
 
npBAF complex IEA
Inferred from Electronic Annotation
more info
 
npBAF complex ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
 
Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108752.1NP_001102222.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

    See proteins identical to NP_001102222.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474035
    UniProtKB/TrEMBL
    D3ZBS9
    Related
    ENSRNOP00000043205, ENSRNOT00000043163
    Conserved Domains (3) summary
    smart00151
    Location:291367
    SWIB; SWI complex, BAF60b domains
    COG5531
    Location:207408
    COG5531; SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]
    cl19732
    Location:3998
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 

    Range
    141356185..141366725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000075.1 

    Range
    127311186..127321720
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)