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    Stx16 syntaxin 16 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362283, updated on 17-May-2013
    Official Symbol
    Stx16provided by RGD
    Official Full Name
    syntaxin 16provided by RGD
    Primary source
    RGD:1309423
    See related
    Ensembl:ENSRNOG00000005281
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
    Location :
    3q42
    Sequence :
    Chromosome: 3; NC_005102.3 (178207252..178234585)
    See Stx16 in MapViewer

    Chromosome 3 - NC_005102.3Genomic Context describing neighboring genes Neighboring gene VAMP (vesicle-associated membrane protein)-associated protein B and C Neighboring gene adenomatosis polyposis coli down-regulated 1-like Neighboring gene aminopeptidase-like 1 Neighboring gene eukaryotic translation initiation factor 4E-like

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    SNAP receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    retrograde transport, endosome to Golgi ISO
    Inferred from Sequence Orthology
    more info
     
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    SNARE complex ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    syntaxin-16
    Names
    syntaxin-16

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108610.1NP_001102080.1  syntaxin-16

      Status: PROVISIONAL

      Source sequence(s)
      CH474062
      UniProtKB/TrEMBL
      D3Z9R7
      Related
      ENSRNOP00000062099, ENSRNOT00000066279
      Conserved Domains (1) summary
      cd00193
      Location:60106
      Blast Score: 111
      t_SNARE; Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in ...

    RefSeqs of Annotated Genomes: Build 5.1

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_5.0 Primary Assembly

    Genomic

    1. NC_005102.3 Reference Rnor_5.0 Primary Assembly

      Range
      178207252..178234585
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000071.1 Alternate Rn_Celera

      Range
      162030293..162057164
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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