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Kmt5b lysine methyltransferase 5B [ Rattus norvegicus (Norway rat) ]

Gene ID: 361688, updated on 26-May-2016
Official Symbol
Kmt5bprovided by RGD
Official Full Name
lysine methyltransferase 5Bprovided by RGD
Primary source
RGD:1311637
See related
Ensembl:ENSRNOG00000016790
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Suv420h1
Orthologs
Location:
1q42
Exon count:
13
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (219000844..219050211)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (225874424..225923708)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene similar to RIKEN cDNA 1810055G02 Neighboring gene family with sequence similarity 18, member B, pseudogene 1 Neighboring gene choline kinase alpha Neighboring gene T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
histone methyltransferase activity (H4-K20 specific) IEA
Inferred from Electronic Annotation
more info
 
histone methyltransferase activity (H4-K20 specific) ISO
Inferred from Sequence Orthology
more info
 
histone-lysine N-methyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
histone-lysine N-methyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
histone H4-K20 methylation ISO
Inferred from Sequence Orthology
more info
 
histone H4-K20 trimethylation IEA
Inferred from Electronic Annotation
more info
 
histone methylation ISO
Inferred from Sequence Orthology
more info
 
muscle organ development IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
condensed nuclear chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
 
condensed nuclear chromosome, centromeric region ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
histone-lysine N-methyltransferase KMT5B
Names
histone-lysine N-methyltransferase SUV420H1
lysine (K)-specific methyltransferase 5B
lysine-specific methyltransferase 5B
su(var)4-20 homolog 1
suppressor of variegation 4-20 homolog 1
suv4-20h1
NP_001101982.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108512.1NP_001101982.1  histone-lysine N-methyltransferase KMT5B

    See identical proteins and their annotated locations for NP_001101982.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473953
    UniProtKB/Swiss-Prot
    P0C2N5
    Related
    ENSRNOP00000022486, ENSRNOT00000022486
    Conserved Domains (1) summary
    smart00317
    Location:203314
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    219000844..219050211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008760150.1XP_008758372.1  

    See identical proteins and their annotated locations for XP_008758372.1

    Conserved Domains (1) summary
    smart00317
    Location:203341
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
  2. XM_008760151.1XP_008758373.1  

    See identical proteins and their annotated locations for XP_008758373.1

    Conserved Domains (1) summary
    smart00317
    Location:203341
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    198553658..198602986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)