These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_029933.1 RefSeqGene
- Range
- 5001..120886
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001172128.1 → NP_001165599.1 pro-interleukin-16 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has multiple differences and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) is longer, compared to isoform 1.
- Source sequence(s)
-
AC103858, AK124725, AK131530
- Consensus CDS
-
CCDS53966.1
- UniProtKB/Swiss-Prot
-
Q14005
- Related
- ENSP00000378155, OTTHUMP00000185571, ENST00000394660, OTTHUMT00000291391
- Conserved Domains (1) summary
-
- cd00992
Location:217 – 292
Blast Score: 199
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
NM_004513.5 → NP_004504.3 pro-interleukin-16 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform (1).
- Source sequence(s)
-
AC103858, DB141707, U82972
- Consensus CDS
-
CCDS10317.1
- UniProtKB/Swiss-Prot
-
Q14005
- UniProtKB/TrEMBL
-
Q9UME6
- Related
- ENSP00000378147, OTTHUMP00000190849, ENST00000394652, OTTHUMT00000303951
- Conserved Domains (1) summary
-
- cd00992
Location:533 – 616
Blast Score: 152
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
NM_172217.3 → NP_757366.2 pro-interleukin-16 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and and 5' coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) is longer at the N-terminus compared to isoform 1.
- Source sequence(s)
-
AC103858, AK124725, AY324389
- Consensus CDS
-
CCDS42069.1
- UniProtKB/Swiss-Prot
-
Q14005
- Related
- ENSP00000302935, OTTHUMP00000190850, ENST00000302987, OTTHUMT00000303952
- Conserved Domains (1) summary
-
- cd00992
Location:217 – 292
Blast Score: 199
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000015.9 Reference GRCh37.p5 Primary Assembly
- Range
- 81489219..81605104
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000147.1 Alternate HuRef
- Range
- 58247361..58363403
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)