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Kdm4A Histone demethylase 4A [ Drosophila melanogaster (fruit fly) ]

Gene ID: 35744, updated on 27-Jun-2015
Official Symbol
Kdm4Aprovided by FlyBase
Official Full Name
Histone demethylase 4Aprovided by FlyBase
Primary source
FLYBASE:FBgn0033233
Locus tag
Dmel_CG15835
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG15835; dJMJD2(1); dkdm4a; dKDM4A; Dmel\CG15835
See Kdm4A in Epigenomics, MapViewer
Location:
43F2-43F2
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.01 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (7922775..7924988, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (3810280..3812493, complement)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene CG30377 gene product from transcript CG30377-RB Neighboring gene CG12159 gene product from transcript CG12159-RB Neighboring gene Cullin 1 Neighboring gene Odorant receptor 43b Neighboring gene CG8791 gene product from transcript CG8791-RA Neighboring gene CG30381 gene product from transcript CG30381-RB Neighboring gene ribonuclease H1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
histone demethylase activity (H3-K36 specific) IDA
Inferred from Direct Assay
more info
PubMed 
histone demethylase activity (H3-K36 specific) IMP
Inferred from Mutant Phenotype
more info
PubMed 
histone demethylase activity (H3-K36 specific) ISS
Inferred from Sequence or Structural Similarity
more info
 
histone demethylase activity (H3-K9 specific) IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
histone H3-K36 demethylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
histone H3-K9 demethylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
histone demethylation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of transcription, DNA-templated ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
Preferred Names
CG15835 gene product from transcript CG15835-RB
Names
CG15835-PA
CG15835-PB
Kdm4A-PA
Kdm4A-PB
histone demethylase 4A
NP_001246194.1
NP_610331.1

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    7922775..7924988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001259265.2NP_001246194.1  histone demethylase 4A, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246194.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4K7U3
    Related
    FBpp0301578, FBtr0309844
    Conserved Domains (2) summary
    pfam02373
    Location:182298
    JmjC; JmjC domain, hydroxylase
    cl15840
    Location:1759
    JmjN; jmjN domain
  2. NM_136487.4NP_610331.1  histone demethylase 4A, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_610331.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9V333
    Related
    FBpp0087961, FBtr0088886
    Conserved Domains (2) summary
    pfam02373
    Location:182298
    JmjC; JmjC domain, hydroxylase
    cl15840
    Location:1759
    JmjN; jmjN domain