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    CG12107 [ Drosophila melanogaster ]

    Gene ID: 35712, updated on 10-May-2012
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    Summary

    Official Symbol
    CG12107provided by Flybase
    Primary source
    FLYBASE:FBgn0033209
    Locus tag
    Dmel_CG12107
    Gene type
    protein coding
    RNA name
    CG12107
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG12107
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    Genomic context

    Location :
    43E9-43E9
    Sequence :
    Chromosome: 2R; NT_033778.3 (3561951..3562867)
    See CG12107 in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene CG12826 gene product from transcript CG12826-RA Neighboring gene mitochondrial ribosomal protein L52 Neighboring gene CG1406 gene product from transcript CG1406-RA Neighboring gene CG1399 gene product from transcript CG1399-RD

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. Blanco E, et al. BMC Dev Biol, 2010 Sep 2. PMID 20813047.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.

    See all (10) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:61586 BioGRID:68334 CG14506    BioGRID  PubMed Two-hybrid 
    BioGRID:61586 BioGRID:60478 CG5375    BioGRID  PubMed Two-hybrid 
    BioGRID:61586 BioGRID:66344 Pnn    BioGRID  PubMed Two-hybrid 
    BioGRID:61586 BioGRID:57986 Sirt4    BioGRID  PubMed Two-hybrid 
    BioGRID:61586 BioGRID:68545 spn-F    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG12107 gene: The CG12107 gene is conserved in human, , dog, cow, mouse, rat, chicken, zebrafish, mosquito, C.elegans, A.thaliana, and rice.
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    General protein information

    Preferred Names
    CG12107 gene product from transcript CG12107-RA
    Names
    CG12107
    CG12107-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      3561951..3562867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136470.3 → NP_610314.1  CG12107 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7JXE4
      Related
      FBpp0087998, FBtr0088924
      Conserved Domains (1) summary
      pfam07019
      Location:41 – 121
      Blast Score: 259
      Rab5ip; Rab5-interacting protein (Rab5ip)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY071508.1 AAL49130.1
    genomic AE013599.4 AAF59208.1
    mRNA AY094757.1 AAM11110.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9V4Q7.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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