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    PSPPH_3289 dyp-type peroxidase [ Pseudomonas syringae pv. phaseolicola 1448A ]

    Gene ID: 3558669, updated on 11-May-2013
    Gene symbol
    PSPPH_3289
    Gene description
    dyp-type peroxidase
    Locus tag
    PSPPH_3289
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas syringae pv. phaseolicola 1448A (strain: 1448A; BAA-978, pathovar: phaseolicola)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
    Sequence :
    NC_005773.3 (3811915..3813237)

    NC_005773.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene iron ABC transporter substrate-binding protein Neighboring gene molybdopterin-binding oxidoreductase

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. Joardar V, et al. J Bacteriol, 2005 Sep. PMID 16159782.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    • PSPPH3289
    Names
    dyp-type peroxidase
    YP_275448.1
    • identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_005773.3

      Range
      3811915..3813237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_275448.1 dyp-type peroxidase [Pseudomonas syringae pv. phaseolicola 1448A]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q48GN5
      Conserved Domains (2) summary
      COG2837
      Location:51 – 431
      Blast Score: 808
      COG2837; Predicted iron-dependent peroxidase [Inorganic ion transport and metabolism]
      TIGR01412
      Location:10 – 431
      Blast Score: 1184
      tat_substr_1; Tat-translocated enzyme
    Nucleotide Protein
    Heading Accession and Version
    genomic CP000058.1 AAZ36062.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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