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    Dpit47 DNA polymerase interacting tpr containing protein of 47kD [ Drosophila melanogaster ]

    Gene ID: 35565, updated on 9-May-2012
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    Summary

    Official Symbol
    Dpit47provided by Flybase
    Official Full Name
    DNA polymerase interacting tpr containing protein of 47kDprovided by Flybase
    Primary source
    FLYBASE:FBgn0033083
    Locus tag
    Dmel_CG3189
    Gene type
    protein coding
    RNA name
    DNA polymerase interacting tpr containing protein of 47kD
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG3189; Dmel\CG3189
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    Genomic context

    Location :
    42C3-42C3
    Sequence :
    Chromosome: 2R; NT_033778.3 (2548155..2549623, complement)
    See Dpit47 in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene CG3183 gene product from transcript CG3183-RA Neighboring gene scrambled Neighboring gene Adh transcription factor 1 Neighboring gene CG15908 gene product from transcript CG15908-RB Neighboring gene CG9410 gene product from transcript CG9410-RD

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Systems genetics of complex traits in Drosophila melanogaster. Ayroles JF, et al. Nat Genet, 2009 Mar. PMID 19234471.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:61464 BioGRID:58297 AP-1gamma    BioGRID  PubMed Two-hybrid 
    BioGRID:61464 BioGRID:62153 Ak6    BioGRID  PubMed Two-hybrid 
    BioGRID:61464 BioGRID:59177 CG18259    BioGRID  PubMed Two-hybrid 
    BioGRID:61464 BioGRID:69651 E5    BioGRID  PubMed Two-hybrid 
    BioGRID:61464 BioGRID:63886 Hsp83    BioGRID  PubMed Two-hybrid 
    BioGRID:61464 BioGRID:69593 Lsp2    BioGRID  PubMed Two-hybrid 
    BioGRID:61464 BioGRID:63243 fd59A    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
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    General protein information

    Preferred Names
    CG3189 gene product from transcript CG3189-RA
    Names
    CG3189-PA
    DNA polymerase interacting tpr containing protein of 47kD
    Dpit47-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      2548155..2549623, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_080367.2 → NP_525106.2  DNA polymerase interacting tpr containing protein of 47kD [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z6M6
      Related
      FBpp0085479, FBtr0086146
      Conserved Domains (2) summary
      cd00189
      Location:93 – 182
      Blast Score: 102
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
      pfam13414
      Location:89 – 156
      Blast Score: 110
      TPR_11; TPR repeat
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE013599.4 AAF57368.2
    mRNA BT132984.1 AEX31654.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9V9C5.1 GenPept
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    Additional Links

    Gene LinkOut

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