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    CG7849 [ Drosophila melanogaster ]

    Gene ID: 35537, updated on 9-May-2012
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    Summary

    Official Symbol
    CG7849provided by Flybase
    Primary source
    FLYBASE:FBgn0033060
    Locus tag
    Dmel_CG7849
    Gene type
    protein coding
    RNA name
    CG7849
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG7849
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    Genomic context

    Location :
    42A9-42A9
    Sequence :
    Chromosome: 2R; NT_033778.3 (1964415..1965593)
    See CG7849 in Epigenomics, MapViewer

    Chromosome 2R - NT_033778.3Genomic Context describing neighboring genes Neighboring gene CCHamide-2 receptor Neighboring gene CG7856 gene product from transcript CG7856-RA Neighboring gene CG7845 gene product from transcript CG7845-RB Neighboring gene CG14590 gene product from transcript CG14590-RA Neighboring gene CG7843 gene product from transcript CG7843-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.
    5. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Hoskins RA, et al. Genome Biol, 2002. PMID 12537574.

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:61441 BioGRID:63867 CG11486    BioGRID  PubMed Two-hybrid 
    BioGRID:61441 BioGRID:67606 CG7046    BioGRID  PubMed Two-hybrid 
    BioGRID:61441 BioGRID:63741 CG7974    BioGRID  PubMed Two-hybrid 
    BioGRID:61441 BioGRID:60737 CG9934    BioGRID  PubMed Two-hybrid 
    BioGRID:61441 BioGRID:60514 CHIP    BioGRID  PubMed Two-hybrid 
    BioGRID:61441 BioGRID:64797 Hip1    BioGRID  PubMed Two-hybrid 
    BioGRID:61441 BioGRID:61004 VhaSFD    BioGRID  PubMed Two-hybrid 
    BioGRID:61441 BioGRID:62900 betaTub56D    BioGRID  PubMed Two-hybrid 
    BioGRID:61441 BioGRID:63646 emc    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG7849 gene product from transcript CG7849-RB
    Names
    CG7849
    CG7849-PB
    NP_610201.1
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.3

      Range
      1964415..1965593
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136357.2 → NP_610201.1  CG7849 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q29QN4
      Related
      FBpp0085330
      Conserved Domains (1) summary
      cd02868
      Location:18 – 292
      Blast Score: 851
      PseudoU_synth_hTruB2_like; Pseudouridine synthase, humanTRUB2_like.
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE013599.4 AAM68342.1
    mRNA BT024356.1 ABC86418.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8MLM7.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content