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    Tc00.1047053507735.20 hypothetical protein [ Trypanosoma cruzi strain CL Brener ]

    Gene ID: 3543185, updated on 17-Oct-2012
    Gene symbol
    Tc00.1047053507735.20
    Gene description
    hypothetical protein
    Locus tag
    Tc00.1047053507735.20
    Gene type
    protein coding
    RNA name
    hypothetical protein, conserved
    RefSeq status
    PROVISIONAL
    Organism
    Trypanosoma cruzi strain CL Brener (strain: CL Brener)
    Lineage
    Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum

    NW_001849475.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene pseudo

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725.
    2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction

    Miscellaneous features

    • Loc: 12194-12304 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.
    • Loc: 12305-13412 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.
    • Loc: 13413-14543 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.
    • Loc: 14544-16661 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.
    • Loc: 16662-17242 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.
    • Loc: 17243-17958 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.
    • Loc: 17959-17992 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.
    • Loc: 17993-20056 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.
    • Loc: 20057-20278 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.
    Names
    hypothetical protein
    XP_812097.1
    • heterozygous, Esmeraldo-like haplotype

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001849475.1

      Range
      10326..22967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_807004.1 → XP_812097.1  hypothetical protein [Trypanosoma cruzi strain CL Brener]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q4DCJ6
      Conserved Domains (2) summary
      pfam06650
      Location:3298 – 3618
      Blast Score: 158
      DUF1162; Protein of unknown function (DUF1162)
      pfam12624
      Location:2 – 118
      Blast Score: 305
      Chorein_N; N-terminal region of Chorein, a TM vesicle-mediated sorter
    Nucleotide Protein
    Heading Accession and Version
    genomic AAHK01000654.1 EAN90246.1
    genomic CH473412.1 EAN90246.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • RefSeq RNAs
        Link to Nucleotide RefSeq RNAs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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