RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_011653.1 RefSeqGene
- Range
- 5001..10850
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001030047.1 → NP_001025218.1 prostate-specific antigen isoform 3 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site at the end of a coding exon, that causes a frameshift. The resulting isoform (3) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC011523, BC005307, M21896
- Consensus CDS
-
CCDS33083.1
- UniProtKB/TrEMBL
-
G3XAE3
- UniProtKB/Swiss-Prot
-
P07288
- UniProtKB/TrEMBL
-
Q15096
- Related
- ENSP00000353829, ENST00000360617
- Conserved Domains (1) summary
-
- cd00190
Location:25 – 210
Blast Score: 446
- Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
-
NM_001030048.1 → NP_001025219.1 prostate-specific antigen isoform 4 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate in-frame splice site at the end of a coding exon. The resulting isoform (4) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AC011523, BC005307, BQ932072
- Consensus CDS
-
CCDS46155.1
- UniProtKB/TrEMBL
-
G3V0H4
- UniProtKB/Swiss-Prot
-
P07288
- Related
- ENSP00000393628, ENST00000422986
- Conserved Domains (1) summary
-
- cd00190
Location:25 – 213
Blast Score: 514
- Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
-
NM_001030050.1 → NP_001025221.1 prostate-specific antigen isoform 6 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 3' UTR and coding region compared to variant 1. The resulting isoform (6) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC011523, BF679511
- Consensus CDS
-
CCDS46156.1
- UniProtKB/TrEMBL
-
C9JXH3
- Related
- ENSP00000401523, ENST00000435152
- Conserved Domains (1) summary
-
- cl00149
Location:25 – 69
Blast Score: 163
- Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
-
NM_001648.2 → NP_001639.1 prostate-specific antigen isoform 1 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1) of this protein.
- Source sequence(s)
-
X05332
- Consensus CDS
-
CCDS12807.1
- UniProtKB/Swiss-Prot
-
P07288
- UniProtKB/TrEMBL
-
Q546G3
- Related
- ENSP00000314151, ENST00000326003
- Conserved Domains (1) summary
-
- cd00190
Location:25 – 256
Blast Score: 614
- Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000019.9 Reference GRCh37.p5 Primary Assembly
- Range
- 51358171..51364020
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000151.1 Alternate HuRef
- Range
- 47693102..47698947
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Suppressed Reference Sequence(s)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_001030049.1: Suppressed sequence
- Description
- NM_001030049.1: This RefSeq was permanently suppressed because it contains non-consensus splice sites that are poorly supported.