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    CG8679 [ Drosophila melanogaster ]

    Gene ID: 35395, updated on 9-May-2012
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    Summary

    Official Symbol
    CG8679provided by Flybase
    Primary source
    FLYBASE:FBgn0032934
    Locus tag
    Dmel_CG8679
    Gene type
    protein coding
    RNA name
    CG8679
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    dLEM3; Dmel\CG8679
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    Genomic context

    Location :
    39B3-39B3
    Sequence :
    Chromosome: 2L; NT_033779.4 (21216004..21218527, complement)
    See CG8679 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG8681 gene product from transcript CG8681-RB Neighboring gene small nuclear RNA U4 at 39B Neighboring gene CG8678 gene product from transcript CG8678-RA Neighboring gene CG8677 gene product from transcript CG8677-RA Neighboring gene CG31626 gene product from transcript CG31626-RA Neighboring gene Hormone receptor-like in 39

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Tissue-specific defects are caused by loss of the Drosophila MAN1 LEM domain protein. Pinto BS, et al. Genetics, 2008 Sep. PMID 18723885.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Expression profiling of a hypercontraction-induced myopathy in Drosophila suggests a compensatory cytoskeletal remodeling response. Montana ES, et al. J Biol Chem, 2006 Mar 24. PMID 16415344.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:61346 BioGRID:69379 And    BioGRID  PubMed Two-hybrid 
    BioGRID:61346 BioGRID:58247 Cp38    BioGRID  PubMed Two-hybrid 
    BioGRID:61346 BioGRID:64113 Tektin-C    BioGRID  PubMed Two-hybrid 
    BioGRID:61346 BioGRID:68764 trbl    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG8679 gene product from transcript CG8679-RA
    Names
    CG8679
    CG8679-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      21216004..21218527, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136255.2 → NP_610099.1  CG8679 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VIE0
      Related
      FBpp0081017
      Conserved Domains (4) summary
      cd00204
      Location:43 – 136
      Blast Score: 165
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cl02649
      Location:404 – 447
      Blast Score: 149
      LEM; LEM domain
      cd10454
      Location:513 – 657
      Blast Score: 479
      GIY-YIG_COG3680_Meta; GIY-YIG domain of hypothetical proteins from Metazoa
      pfam12796
      Location:47 – 136
      Blast Score: 159
      Ank_2; Ankyrin repeats (3 copies)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AAF53982.1
    mRNA BT016107.1 AAV36992.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VIE0.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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