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    ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ Colwellia psychrerythraea 34H ]

    Gene ID: 3519583, updated on 18-May-2013
    Gene symbol
    ispH
    Gene description
    4-hydroxy-3-methylbut-2-enyl diphosphate reductase
    Locus tag
    CPS_1211
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Colwellia psychrerythraea 34H (strain: 34H; BAA-681)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia
    Sequence :
    NC_003910.7 (1244343..1245272)

    NC_003910.7Genomic Context describing neighboring genes Neighboring gene phosphate regulon sensor protein PhoR Neighboring gene phosphate ABC transporter periplasmic phosphate-binding protein Neighboring gene hypothetical protein Neighboring gene type IV pilus modification protein PilV

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Methé BA, et al. Proc Natl Acad Sci U S A, 2005 Aug 2. PMID 16043709.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    4-hydroxy-3-methylbut-2-enyl diphosphate reductase
    YP_267954.1
    • catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003910.7

      Range
      1244343..1245272
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_267954.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Colwellia psychrerythraea 34H]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q486R1
      Conserved Domains (2) summary
      COG0761
      Location:1 – 295
      Blast Score: 1227
      lytB; 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
      PRK01045
      Location:1 – 301
      Blast Score: 1366
      ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    genomic CP000083.1 AAZ24157.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q486R1.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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