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    Oli Olig family [ Drosophila melanogaster ]

    Gene ID: 35066, updated on 10-May-2012
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    Summary

    Official Symbol
    Oliprovided by Flybase
    Official Full Name
    Olig familyprovided by Flybase
    Primary source
    FLYBASE:FBgn0032651
    Locus tag
    Dmel_CG5545
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    bHLHb23; CG5545; Dmel\CG5545; Doli; Olig
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    Genomic context

    Location :
    36D1-36D1
    Sequence :
    Chromosome: 2L; NT_033779.4 (17589407..17591267)
    See Oli in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene mir-124 stem loop Neighboring gene mir-287 stem loop Neighboring gene Synaptotagmin alpha Neighboring gene CG6870 gene product from transcript CG6870-RA Neighboring gene CG15147 gene product from transcript CG15147-RB

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. Blanco E, et al. BMC Dev Biol, 2010 Sep 2. PMID 20813047.
    2. MidExDB: a database of Drosophila CNS midline cell gene expression. Wheeler SR, et al. BMC Dev Biol, 2009 Nov 10. PMID 19903351.
    3. The Drosophila homeodomain transcription factor, Vnd, associates with a variety of co-factors, is extensively phosphorylated and forms multiple complexes in embryos. Zhang H, et al. FEBS J, 2008 Oct. PMID 18795949.
    4. Phylogenetic and expression analysis of the basic helix-loop-helix transcription factor gene family: genomic approach to cellular differentiation. Stevens JD, et al. Differentiation, 2008 Nov. PMID 18557763.
    5. Automatic image analysis for gene expression patterns of fly embryos. Peng H, et al. BMC Cell Biol, 2007 Jul 10. PMID 17634097.

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:61062 BioGRID:69379 And    BioGRID  PubMed Two-hybrid 
    BioGRID:61062 BioGRID:65995 CG9727    BioGRID  PubMed Two-hybrid 
    BioGRID:61062 BioGRID:67217 Dlc90F    BioGRID  PubMed Two-hybrid 
    BioGRID:61062 BioGRID:66612 GstD1    BioGRID  PubMed Two-hybrid 
    BioGRID:61062 BioGRID:59137 betaCop    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    sequence-specific DNA binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    regulation of transcription, DNA-dependent ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG5545 gene product from transcript CG5545-RB
    Names
    CG5545-PA
    CG5545-PB
    CG5545-PC
    Oli-PA
    Oli-PB
    Oli-PC
    olig family
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      17589407..17591267
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001201901.1 → NP_001188830.1  olig family, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VJC1
      Conserved Domains (1) summary
      cd00083
      Location:130 – 187
      Blast Score: 160
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    2. NM_078868.2 → NP_523592.1  olig family, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VJC1
      Related
      FBpp0080539, FBtr0080986
      Conserved Domains (1) summary
      cd00083
      Location:130 – 187
      Blast Score: 160
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    3. NM_001201902.1 → NP_001188831.1  olig family, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VJC1
      Conserved Domains (1) summary
      cd00083
      Location:130 – 187
      Blast Score: 160
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 ADV37079.1
    genomic AE014134.5 AAF53631.1
    genomic AE014134.5 ADV37080.1
    mRNA BT004905.1 AAO47883.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VJC1.1 GenPept
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    Additional Links

    Gene LinkOut

      Supplemental Content