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    CG16890 [ Drosophila melanogaster ]

    Gene ID: 34781, updated on 9-May-2012
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    Summary

    Official Symbol
    CG16890provided by Flybase
    Primary source
    FLYBASE:FBgn0028932
    Locus tag
    Dmel_CG16890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BG:DS00797.4; Dmel\CG16890
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    Genomic context

    Location :
    34D1-34D1
    Sequence :
    Chromosome: 2L; NT_033779.4 (13782229..13783457, complement)
    See CG16890 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG43376 gene product from transcript CG43376-RA Neighboring gene CG9008 gene product from transcript CG9008-RA Neighboring gene ncRNA Neighboring gene CG7393 gene product from transcript CG7393-RA Neighboring gene CG31731 gene product from transcript CG31731-RB Neighboring gene CG16863 gene product from transcript CG16863-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. A genomic response to the yeast transcription factor GAL4 in Drosophila. Liu Y, et al. Fly (Austin), 2008 Mar-Apr. PMID 18820459.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.

    See all (11) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:60815 BioGRID:58239 Es2    BioGRID  PubMed Two-hybrid 
    BioGRID:60815 BioGRID:68808 RpL30    BioGRID  PubMed Two-hybrid 
    BioGRID:60815 BioGRID:70690 RpS14a    BioGRID  PubMed Two-hybrid 
    BioGRID:60815 BioGRID:70691 RpS14b    BioGRID  PubMed Two-hybrid 
    BioGRID:60815 BioGRID:61396 gus    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG16890 gene: The CG16890 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, mosquito, and C.elegans.
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    General protein information

    Preferred Names
    CG16890 gene product from transcript CG16890-RB
    Names
    CG16890
    CG16890-PA
    CG16890-PB
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      13782229..13783457, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_165057.2 → NP_723837.1  CG16890, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IP65
      Related
      FBpp0080151
      Conserved Domains (1) summary
      pfam09725
      Location:41 – 148
      Blast Score: 406
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    2. NM_135827.3 → NP_609671.1  CG16890, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9V3M2
      Related
      FBpp0080152, FBtr0080575
      Conserved Domains (1) summary
      pfam09725
      Location:41 – 160
      Blast Score: 439
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AAN10847.1
    genomic AE014134.5 AAF53327.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IP65.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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