Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    ZFP57 ZFP57 zinc finger protein [ Homo sapiens (human) ]

    Gene ID: 346171, updated on 22-May-2013
    Official Symbol
    ZFP57provided by HGNC
    Official Full Name
    ZFP57 zinc finger proteinprovided by HGNC
    Primary source
    HGNC:18791
    Locus tag
    DADB-25P22.4
    See related
    Ensembl:ENSG00000204644; MIM:612192; Vega:OTTHUMG00000031158
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TNDM1; ZNF698; C6orf40; bA145L22; bA145L22.2
    Summary
    The protein encoded by this gene is a zinc finger protein containing a KRAB domain. Studies in mouse suggest that this protein may function as a transcriptional repressor. Mutations in this gene have been associated with transient neonatal diabetes mellitus type 1 (TNDM1).[provided by RefSeq, Sep 2009]
    Location :
    6p22.1
    Sequence :
    Chromosome: 6; NC_000006.11 (29640169..29644931, complement)
    See ZFP57 in Epigenomics, MapViewer

    Chromosome 6 - NC_000006.11Genomic Context describing neighboring genes Neighboring gene SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 1 Neighboring gene myelin oligodendrocyte glycoprotein Neighboring gene zinc finger, DHHC-type containing 20 pseudogene 1 Neighboring gene HLA complex group 4 pseudogene 11

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Transient neonatal diabetes mellitus 1

    Summary from GeneReviews: Diabetes Mellitus, 6q24-Related Transient Neonatal Go to GeneReviews

    Disease Characteristics
    6q24-related transient neonatal diabetes mellitus (6q24-TNDM) is defined as transient neonatal diabetes mellitus caused by genetic aberrations of the imprinted locus at 6q24. The cardinal features are: severe intrauterine growth retardation, hyperglycemia that begins in the neonatal period in a term infant and resolves by age 18 months, dehydration, and absence of ketoacidosis. Macroglossia and umbilical hernia are often present. In the subset of children with ZFP57 mutations, other manifestations can include structural brain abnormalities, developmental delay, and congenital heart disease. Diabetes mellitus usually starts within the first week of life and lasts on average three months but can last over a year. Although insulin is usually required initially, the need for insulin gradually declines over time. Intermittent episodes of hyperglycemia may occur in childhood, particularly during intercurrent illnesses. Diabetes mellitus may recur in adolescence or later in adulthood. Women who have had 6q24-TNDM are at risk for relapse during pregnancy.
    Diagnosis Testing
    6q24-TNDM is caused by overexpression of the imprinted genes at 6q24 (PLAGL1 [ZAC] and HYMAI). A 'differentially methylated region' (DMR) is present within the shared promoter of these genes. Normally, expression of the maternal alleles of PLAGL1 and HYMAI are silenced by DMR methylation and only the paternal alleles PLAGL1 and HYMAI are expressed. Three different genetic mechanisms result in twice the normal dosage of these two genes and cause 6q24-TNDM: Paternal uniparental disomy of chromosome 6 (41%); Duplication of 6q24 on the paternal allele (29%); and Hypomethylation of the maternal DMR resulting in inappropriate expression of the maternal PLAGL1 and HYMAI alleles (30%). Maternal PLAGL1/HYMAI DMR hypomethylation may result from an isolated imprinting mutation or as part of a more generalized defect termed 'hypomethylation at imprinted loci' (HIL). Homozygous or compound heterozygous ZFP57 mutations account for almost half of TNDM-HIL; the other causes of HIL are not known. Rapid testing is available on a clinical basis to confirm the diagnosis of 6q24-TNDM by detecting methylation changes resulting from any of the three mechanisms of disease causation. Additional clinical testing can detect paternal UPD6 and paternal 6q24 duplication. Molecular genetic testing of ZFP57 is available on a limited clinical basis.
    Genetic Counseling
    The risk to sibs and offspring of a proband of having 6q24-TNDM or of developing diabetes later in life depends on the genetic mechanism in the family. Recurrence risk counseling by a genetics professional is strongly recommended. 6q24-TNDM caused by paternal UPD6 is typically a de novo, non-recurrent event. 6q24-TNDM caused by paternal dup6q24 can occur de novo, be inherited in an autosomal dominant manner, or be inherited as a part of a complex chromosome rearrangement; TNDM caused by an inherited dup6q24 may recur in sibs and offspring of a proband if the duplication is inherited from the father. Prenatal diagnosis of paternal dup6q24 is possible in pregnancies at risk for a structural chromosome abnormality. TIDM-HIL inherited in an autosomal recessive manner when caused by mutations in ZFP57; however, the phenotype of homozygous or compound heterozygous sibs is variable and cannot be predicted by molecular genetic testing.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:131375 BioGRID:108123 DNMT1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:131375 BioGRID:108125 DNMT3A    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:131375 BioGRID:108126 DNMT3B    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:131375 BioGRID:115457 TRIM28    BioGRID  PubMed Affinity Capture-Western 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    DNA methylation involved in embryo development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of transcription from RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
     
    peripheral nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of gene expression by genetic imprinting IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nuclear heterochromatin IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    zinc finger protein 57 homolog
    Names
    zinc finger protein 57 homolog
    zfp-57
    zinc finger protein 698

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_013045.1 RefSeqGene

      Range
      5001..9763
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001109809.2NP_001103279.2  zinc finger protein 57 homolog

      Status: REVIEWED

      Source sequence(s)
      BC157878, BC171888
      Consensus CDS
      CCDS43436.2
      UniProtKB/TrEMBL
      B7ZW61
      UniProtKB/Swiss-Prot
      Q9NU63
      Related
      ENSP00000418259, OTTHUMP00000215586, ENST00000488757, OTTHUMT00000355773
      Conserved Domains (4) summary
      cd07765
      Location:4482
      Blast Score: 175
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box.
      smart00349
      Location:44104
      Blast Score: 261
      KRAB; krueppel associated box
      pfam13465
      Location:217240
      Blast Score: 80
      zf-H2C2_2; Zinc-finger double domain
      cl15478
      Location:260281
      Blast Score: 82
      zf-C2H2; Zinc finger, C2H2 type

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 ALT_REF_LOCI_1

    Genomic

    1. NT_167244.1 Reference GRCh37.p10 ALT_REF_LOCI_1

      Range
      943694..944435, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p10 ALT_REF_LOCI_2

    Genomic

    1. NT_113891.2 Reference GRCh37.p10 ALT_REF_LOCI_2

      Range
      1158971..1163760, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p10 ALT_REF_LOCI_3

    Genomic

    1. NT_167245.1 Reference GRCh37.p10 ALT_REF_LOCI_3

      Range
      943523..948287, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p10 ALT_REF_LOCI_4

    Genomic

    1. NT_167246.1 Reference GRCh37.p10 ALT_REF_LOCI_4

      Range
      943126..947889, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p10 ALT_REF_LOCI_5

    Genomic

    1. NT_167247.1 Reference GRCh37.p10 ALT_REF_LOCI_5

      Range
      943351..948108, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p10 ALT_REF_LOCI_6

    Genomic

    1. NT_167248.1 Reference GRCh37.p10 ALT_REF_LOCI_6

      Range
      943489..948253, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p10 ALT_REF_LOCI_7

    Genomic

    1. NT_167249.1 Reference GRCh37.p10 ALT_REF_LOCI_7

      Range
      980722..985482, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000006.11 Reference GRCh37.p10 Primary Assembly

      Range
      29640169..29644931, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000138.1 Alternate HuRef

      Range
      29447209..29452012, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018917.1 Alternate CHM1_1.0

      Range
      29560734..29565497, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...