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    CG3838 [ Drosophila melanogaster ]

    Gene ID: 34275, updated on 9-May-2012
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    Summary

    Official Symbol
    CG3838provided by Flybase
    Primary source
    FLYBASE:FBgn0032130
    Locus tag
    Dmel_CG3838
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-WO0118547.445; bs09e08.y1; Dmel\CG3838; NEST:bs09e08
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    Genomic context

    Location :
    30B12-30B12
    Sequence :
    Chromosome: 2L; NT_033779.4 (9568892..9573572)
    See CG3838 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG13114 gene product from transcript CG13114-RB Neighboring gene junctophilin Neighboring gene CG4389 gene product from transcript CG4389-RA Neighboring gene CG31709 gene product from transcript CG31709-RA Neighboring gene glial cells missing Neighboring gene ncRNA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Fungal peptide Destruxin A plays a specific role in suppressing the innate immune response in Drosophila melanogaster. Pal S, et al. J Biol Chem, 2007 Mar 23. PMID 17227774.
    4. A gain-of-function screen identifying genes required for vein formation in the Drosophila melanogaster wing. Molnar C, et al. Genetics, 2006 Nov. PMID 16980395.
    5. Functional genomics identifies TOR-regulated genes that control growth and division. Guertin DA, et al. Curr Biol, 2006 May 23. PMID 16713952.

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:60374 BioGRID:58530 Amun    BioGRID  PubMed Two-hybrid 
    BioGRID:60374 BioGRID:68044 CG14546    BioGRID  PubMed Two-hybrid 
    BioGRID:60374 BioGRID:61566 CG1598    BioGRID  PubMed Two-hybrid 
    BioGRID:60374 BioGRID:67223 CG7669    BioGRID  PubMed Two-hybrid 
    BioGRID:60374 BioGRID:62137 Nup54    BioGRID  PubMed Two-hybrid 
    BioGRID:60374 BioGRID:67757 Pli    BioGRID  PubMed Two-hybrid 
    BioGRID:60374 BioGRID:70923 c(3)G    BioGRID  PubMed Two-hybrid 
    BioGRID:60374 BioGRID:59697 daw    BioGRID  PubMed Two-hybrid 
    BioGRID:60374 BioGRID:64624 fd68A    BioGRID  PubMed Two-hybrid 
    BioGRID:60374 BioGRID:66551 glo    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG3838 gene product from transcript CG3838-RA
    Names
    CG3838
    CG3838-PA
    CG3838-PB
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      9568892..9573572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_164859.1 → NP_723469.1  CG3838, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VLA6
      Related
      FBpp0079432, FBtr0079834
      Conserved Domains (2) summary
      pfam02944
      Location:356 – 390
      Blast Score: 119
      BESS; BESS motif
      cl15779
      Location:60 – 145
      Blast Score: 216
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. NM_135454.4 → NP_609298.1  CG3838, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VLA6
      Related
      FBpp0079433, FBtr0079835
      Conserved Domains (2) summary
      pfam02944
      Location:356 – 390
      Blast Score: 119
      BESS; BESS motif
      cl15779
      Location:60 – 145
      Blast Score: 216
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA AY122150.1 AAM52662.1
    genomic AE014134.5 AAF52788.1
    genomic AE014134.5 AAN10696.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VLA6.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content