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    Rcd-1r Rcd-1 related [ Drosophila melanogaster ]

    Gene ID: 34229, updated on 10-May-2012
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    Summary

    Official Symbol
    Rcd-1rprovided by Flybase
    Official Full Name
    Rcd-1 relatedprovided by Flybase
    Primary source
    FLYBASE:FBgn0032089
    Locus tag
    Dmel_CG9573
    Gene type
    protein coding
    RNA name
    Rcd-1 related
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG9573; Dmel\CG9573; Drcd-1r
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    Genomic context

    Location :
    29F7-29F7
    Sequence :
    Chromosome: 2L; NT_033779.4 (9012885..9014070, complement)
    See Rcd-1r in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG18661 gene product from transcript CG18661-RA Neighboring gene Trypsin 29F Neighboring gene CG9568 gene product from transcript CG9568-RA Neighboring gene CG13102 gene product from transcript CG13102-RB Neighboring gene CG9582 gene product from transcript CG9582-RA Neighboring gene CG31708 gene product from transcript CG31708-RC

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Evolution of alternative splicing in newly evolved genes of Drosophila. Zhan Z, et al. Gene, 2011 Jan 1. PMID 20851753.
    2. Drcd-1 related: a positively selected spermatogenesis retrogene in Drosophila. Quezada-Díaz JE, et al. Genetica, 2010 Oct. PMID 20694743.
    3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    5. Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila. Bai Y, et al. Genome Biol, 2007. PMID 17233920.

    See all (13) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. Drcd-1r is a novel gene with testis-specific function, and originated through retroposition of the parental gene Drcd-1.
      Title: Drcd-1 related: a positively selected spermatogenesis retrogene in Drosophila.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:60341 BioGRID:68371 ATPsyn-gamma    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:61443 Ars2    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:67510 C15    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:61233 CG10262    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:65925 CG10979    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:65653 CG11248    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:64295 CG12262    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:65741 CG12768    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:67759 CG13597    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:72846 CG17376    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:77495 CG33052    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:63322 CG3906    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:66385 CG3925    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:58854 CG8128    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:62954 Cpr56F    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:69651 E5    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:61528 Gadd45    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:68058 HLHm5    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:61846 Orc6    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:70027 Pk17E    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:78249 RpL5    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:66163 Sgt1    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:60919 esg    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:64731 l(3)j2D3    BioGRID  PubMed Two-hybrid 
    BioGRID:60341 BioGRID:68774 pwn    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the Rcd-1r gene: The Rcd-1r gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, mosquito, C.elegans, S.cerevisiae, K.lactis, , S.pombe, , N.crassa, A.thaliana, rice, and P.falciparum.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    spermatogenesis IEP
    Inferred from Expression Pattern
    more info
    		  
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
    		  
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    General protein information

    Preferred Names
    CG9573 gene product from transcript CG9573-RA
    Names
    CG9573-PA
    Drcd-1 related
    Rcd-1 related
    Rcd-1r-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      9012885..9014070, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135425.2 → NP_609269.1  Rcd-1 related [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VLF2
      Related
      FBpp0079380, FBtr0079779
      Conserved Domains (1) summary
      cl02160
      Location:22 – 281
      Blast Score: 1071
      Rcd1; Cell differentiation family, Rcd1-like
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AAF52741.1
    genomic HM358906.1 ADL67575.1
    genomic HM358910.1 ADL67579.1
    genomic HM358903.1 ADL67572.1
    genomic HM358897.1 ADL67566.1
    mRNA AY075185.1 AAL68055.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VLF2.1 GenPept
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    Additional Links

    Gene LinkOut

      Supplemental Content