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    CG13090 [ Drosophila melanogaster ]

    Gene ID: 34187, updated on 9-May-2012
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    Summary

    Official Symbol
    CG13090provided by Flybase
    Primary source
    FLYBASE:FBgn0032054
    Locus tag
    Dmel_CG13090
    Gene type
    protein coding
    RNA name
    CG13090
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13090
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    Genomic context

    Location :
    29D4-29D4
    Sequence :
    Chromosome: 2L; NT_033779.4 (8517446..8519180)
    See CG13090 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG13097 gene product from transcript CG13097-RA Neighboring gene CG13089 gene product from transcript CG13089-RA Neighboring gene mitochondrial ribosomal protein L51 Neighboring gene CG13091 gene product from transcript CG13091-RA Neighboring gene Angiotensin-converting enzyme-related

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208.
    5. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Hoskins RA, et al. Genome Biol, 2002. PMID 12537574.

    See all (9) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:60307 BioGRID:62667 Apc10    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:67510 C15    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:63867 CG11486    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:65093 CG13067    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:57694 CG14806    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:62243 CG17050    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:67178 CG18012    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:57754 CG2865    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:77150 CG31626    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:58133 CG4617    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:59945 CG7277    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:67516 E2f    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:67937 Mocs2    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:58444 Myo10A    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:60430 Pen    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:61322 RPA2    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:61486 SdhB    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:58050 Spx    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:68097 TwdlB    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:65756 TwdlG    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:68098 TwdlL    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:60352 borr    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:69740 eIF-4E    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:63267 l(2)k09913    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:68777 sol    BioGRID  PubMed Two-hybrid 
    BioGRID:60307 BioGRID:60389 zf30C    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG13090 gene: The CG13090 gene is conserved in human, chimpanzee, , dog, mouse, rat, chicken, zebrafish, mosquito, C.elegans, S.cerevisiae, K.lactis, , S.pombe, , N.crassa, A.thaliana, and rice.

    Pathways from BioSystems

    • Sulfur relay system, organism-specific biosystem (from KEGG)
      Sulfur relay system, organism-specific biosystemUbiquitin and ubiquitin-like proteins (Ubls) are signalling messengers that control many cellular functions, such as cell proliferation, apoptosis, and DNA repair. It is suggested that Ub-protein mod...
    • Sulfur relay system, conserved biosystem (from KEGG)
      Sulfur relay system, conserved biosystemUbiquitin and ubiquitin-like proteins (Ubls) are signalling messengers that control many cellular functions, such as cell proliferation, apoptosis, and DNA repair. It is suggested that Ub-protein mod...

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    Mo-molybdopterin cofactor sulfurase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    Mo-molybdopterin cofactor biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG13090 gene product from transcript CG13090-RA
    Names
    CG13090
    CG13090-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      8517446..8519180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135396.2 → NP_609240.2  CG13090 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VLJ8
      Related
      FBpp0079295, FBtr0079683
      Conserved Domains (3) summary
      cd01526
      Location:336 – 453
      Blast Score: 417
      RHOD_ThiF; Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein ...
      cd00757
      Location:71 – 299
      Blast Score: 841
      ThiF_MoeB_HesA_family; ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD ...
      PRK07878
      Location:56 – 453
      Blast Score: 874
      PRK07878; molybdopterin biosynthesis-like protein MoeZ; Validated
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AAF52691.1
    mRNA BT044400.1 ACH92465.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VLJ8.1 GenPept
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    Additional Links

    Gene LinkOut

      Supplemental Content