My NCBISign In

Display Settings:

Format

Send to:

Choose Destination

    CG5149 [ Drosophila melanogaster ]

    Gene ID: 34013, updated on 9-May-2012
    Help top of page

    Summary

    Official Symbol
    CG5149provided by Flybase
    Primary source
    FLYBASE:FBgn0031904
    Locus tag
    Dmel_CG5149
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5149
    Help top of page

    Genomic context

    Location :
    27F3-27F3
    Sequence :
    Chromosome: 2L; NT_033779.4 (7384486..7388248, complement)
    See CG5149 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG4971 gene product from transcript CG4971-RB Neighboring gene neither inactivation nor afterpotential C Neighboring gene CG5155 gene product from transcript CG5155-RA Neighboring gene CG5160 gene product from transcript CG5160-RA Neighboring gene CG5171 gene product from transcript CG5171-RC

    Help top of page

    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
    Helptop of page

    Bibliography

    Related articles in PubMed

    1. The establishment of sexual identity in the Drosophila germline. Casper AL, et al. Development, 2009 Nov. PMID 19855024.
    2. Organization and regulation of sex-specific thioredoxin encoding genes in the genus Drosophila. Svensson MJ, et al. Dev Genes Evol, 2007 Sep. PMID 17701050.
    3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    5. Spotted-dick, a zinc-finger protein of Drosophila required for expression of Orc4 and S phase. Page AR, et al. EMBO J, 2005 Dec 21. PMID 16369566.

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Help top of page

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:60159 BioGRID:58700 CG11164    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:60093 CG11327    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:63134 CG11474    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:64254 CG14834    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:58285 CG15365    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:59864 CG15631    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:60616 CG6287    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:66712 CG8449    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:61700 CG8635    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:77146 His2A:CG31618    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:60443 RpL7    BioGRID  PubMed Two-hybrid 
    BioGRID:60159 BioGRID:63427 eIF-5A    BioGRID  PubMed Two-hybrid 
    Help top of page

    General gene information

    Markers

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    tight junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Help top of page

    General protein information

    Preferred Names
    CG5149 gene product from transcript CG5149-RA
    Names
    CG5149
    CG5149-PA
    CG5149-PB
    Help top of page

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      7384486..7388248, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135266.3 → NP_609110.1  CG5149, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VM22
      Related
      FBpp0079093, FBtr0079469
      Conserved Domains (1) summary
      cl02144
      Location:232 – 400
      Blast Score: 431
      TLD; TLD

    2. NM_001144333.1 → NP_001137805.1  CG5149, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z037
      Related
      FBpp0113079, FBtr0114587
      Conserved Domains (1) summary
      cl02144
      Location:232 – 383
      Blast Score: 361
      TLD; TLD
    Help top of page

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AAF52506.1
    mRNA AY069441.1 AAL39586.1
    genomic AE014134.5 ACL83011.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VM22.1 GenPept
    Help top of page

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content