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    CG4496 [ Drosophila melanogaster ]

    Gene ID: 34000, updated on 9-May-2012
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    Summary

    Official Symbol
    CG4496provided by Flybase
    Primary source
    FLYBASE:FBgn0031894
    Locus tag
    Dmel_CG4496
    Gene type
    protein coding
    RNA name
    CG4496
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG4496
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    Genomic context

    Location :
    27E4-27E4
    Sequence :
    Chromosome: 2L; NT_033779.4 (7185461..7188068, complement)
    See CG4496 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene PDGF- and VEGF-related factor 2 Neighboring gene PDGF- and VEGF-related factor 3 Neighboring gene CG4495 gene product from transcript CG4495-RA Neighboring gene CG4497 gene product from transcript CG4497-RB Neighboring gene CG4502 gene product from transcript CG4502-RB

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Genetic modifier screens reveal new components that interact with the Drosophila dystroglycan-dystrophin complex. Kucherenko MM, et al. PLoS One, 2008 Jun 11. PMID 18545683.
    2. Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes. Lin MF, et al. Genome Res, 2007 Dec. PMID 17989253.
    3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:60146 BioGRID:58854 CG8128    BioGRID  PubMed Two-hybrid 
    BioGRID:60146 BioGRID:61365 Cul-2    BioGRID  PubMed Two-hybrid 
    BioGRID:60146 BioGRID:57780 HLH3B    BioGRID  PubMed Two-hybrid 
    BioGRID:60146 BioGRID:61832 dap    BioGRID  PubMed Two-hybrid 
    BioGRID:60146 BioGRID:77545 p53    BioGRID  PubMed Two-hybrid 
    BioGRID:60146 BioGRID:58031 rux    BioGRID  PubMed Two-hybrid 
    BioGRID:60146 BioGRID:57584 skpA    BioGRID  PubMed Two-hybrid 
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    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    intracellular IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG4496 gene product from transcript CG4496-RA
    Names
    CG4496
    CG4496-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      7185461..7188068, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135257.1 → NP_609101.1  CG4496 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VM37
      Related
      FBpp0079047, FBtr0079419
      Conserved Domains (2) summary
      PHA00733
      Location:424 – 478
      Blast Score: 83
      PHA00733; hypothetical protein
      pfam13465
      Location:259 – 282
      Blast Score: 95
      zf-H2C2_2; Zinc-finger double domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    mRNA BT133060.1 AEX93145.1
    genomic AE014134.5 AAF52490.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VM37.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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