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    CG11266 [ Drosophila melanogaster ]

    Gene ID: 33989, updated on 9-May-2012
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    Summary

    Official Symbol
    CG11266provided by Flybase
    Primary source
    FLYBASE:FBgn0031883
    Locus tag
    Dmel_CG11266
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Caper; CAPER; CC1.3; cg11266; Dmel\CG11266; HCC1
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    Genomic context

    Location :
    27D5-27D5
    Sequence :
    Chromosome: 2L; NT_033779.4 (7032713..7037916)
    See CG11266 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG3476 gene product from transcript CG3476-RA Neighboring gene CG9100 gene product from transcript CG9100-RB Neighboring gene milton Neighboring gene Menin 1 Neighboring gene CG31907 gene product from transcript CG31907-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Control of alternative splicing by signal-dependent degradation of splicing-regulatory proteins. Katzenberger RJ, et al. J Biol Chem, 2009 Apr 17. PMID 19218244.
    2. Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes. Herold N, et al. Mol Cell Biol, 2009 Jan. PMID 18981222.
    3. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    4. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    5. The carnegie protein trap library: a versatile tool for Drosophila developmental studies. Buszczak M, et al. Genetics, 2007 Mar. PMID 17194782.

    See all (16) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:60138 BioGRID:67016 Bin1    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:67073 CG10324    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:60138 CG11266    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:59238 CG12203    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:60427 CG13131    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:66513 CG14708    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:66561 CG31211    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:77342 CG31997    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:64646 CG6163    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:58835 CG6340    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:65342 CG6843    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:63721 CG7879    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:58854 CG8128    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:66318 CG8273    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:60245 CG8455    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:59685 Cwc25    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:68286 Doa    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:65788 Fip1    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:71511 Hsp70Aa    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:69381 Hsp70Ab    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:69382 Hsp70Ba    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:71512 Hsp70Bb    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:72503 Hsp70Bbb    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:71513 Hsp70Bc    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:66494 KP78b    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:63576 Peb    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:77362 PebII    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:61322 RPA2    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:68298 Slu7    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:58050 Spx    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:60406 Srp54    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:57644 png    BioGRID  PubMed Two-hybrid 
    BioGRID:60138 BioGRID:63436 snama    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG11266 gene: The CG11266 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, mosquito, C.elegans, S.pombe, , N.crassa, A.thaliana, rice, and P.falciparum.

    Pathways from BioSystems

    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemThis process describes the conversion of precursor messenger RNA into mature messenger RNA (mRNA). The pre-mRNA molecule undergoes three main modifications. These modifications are 5' capping, 3' pol...

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    mRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    RNA splicing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    nuclear mRNA splicing, via spliceosome IC
    Inferred by Curator
    more info
    		 PubMed 
    regulation of alternative nuclear mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    catalytic step 2 spliceosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    nucleus IC
    Inferred by Curator
    more info
    		 PubMed 
    precatalytic spliceosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG11266 gene product from transcript CG11266-RG
    Names
    CG11266
    CG11266-PA
    CG11266-PB
    CG11266-PC
    CG11266-PD
    CG11266-PE
    CG11266-PF
    CG11266-PG
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      7032713..7037916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_164735.1 → NP_723248.1  CG11266, isoform G [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IPI7
      Related
      FBpp0088581, FBtr0089638
      Conserved Domains (2) summary
      cd00590
      Location:29 – 101
      Blast Score: 231
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
      TIGR01622
      Location:1 – 271
      Blast Score: 762
      SF-CC1; splicing factor, CC1-like family

    2. NM_164730.1 → NP_723243.1  CG11266, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VM49
      Related
      FBpp0088583, FBtr0089640
      Conserved Domains (1) summary
      cd00590
      Location:336 – 408
      Blast Score: 228
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...

    3. NM_164734.2 → NP_723247.1  CG11266, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IPI7
      Related
      FBpp0088580
      Conserved Domains (2) summary
      cd00590
      Location:29 – 101
      Blast Score: 231
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
      TIGR01622
      Location:1 – 271
      Blast Score: 762
      SF-CC1; splicing factor, CC1-like family

    4. NM_164731.2 → NP_723244.2  CG11266, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IPI7
      Related
      FBpp0088577
      Conserved Domains (2) summary
      cd00590
      Location:29 – 101
      Blast Score: 231
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
      TIGR01622
      Location:1 – 271
      Blast Score: 762
      SF-CC1; splicing factor, CC1-like family

    5. NM_164733.2 → NP_723246.1  CG11266, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IPI7
      Related
      FBpp0088582
      Conserved Domains (2) summary
      cd00590
      Location:29 – 101
      Blast Score: 231
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
      TIGR01622
      Location:1 – 271
      Blast Score: 762
      SF-CC1; splicing factor, CC1-like family

    6. NM_164732.2 → NP_723245.1  CG11266, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IPI7
      Related
      FBpp0088578
      Conserved Domains (2) summary
      cd00590
      Location:29 – 101
      Blast Score: 231
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
      TIGR01622
      Location:1 – 271
      Blast Score: 762
      SF-CC1; splicing factor, CC1-like family

    7. NM_135251.3 → NP_609095.1  CG11266, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VM49
      Related
      FBpp0088579
      Conserved Domains (1) summary
      cd00590
      Location:336 – 408
      Blast Score: 228
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AAN10619.1
    genomic AE014134.5 AAN10615.2
    genomic AE014134.5 AAN10617.1
    genomic AE014134.5 AAN10618.1
    genomic AE014134.5 AAN10616.1
    genomic AE014134.5 AAN10614.1
    genomic AE014134.5 AAF52478.1
    mRNA AY051860.1 AAK93284.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IPI7.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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