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    CG16947 [ Drosophila melanogaster ]

    Gene ID: 33901, updated on 10-May-2012
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    Summary

    Official Symbol
    CG16947provided by Flybase
    Primary source
    FLYBASE:FBgn0031816
    Locus tag
    Dmel_CG16947
    Gene type
    protein coding
    RNA name
    CG16947
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:Posey20; Dmel\CG16947
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    Genomic context

    Location :
    26D5-26D6
    Sequence :
    Chromosome: 2L; NT_033779.4 (6459079..6463843, complement)
    See CG16947 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene real-time Neighboring gene farjavit Neighboring gene CG9531 gene product from transcript CG9531-RA Neighboring gene mummy

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. Blanco E, et al. BMC Dev Biol, 2010 Sep 2. PMID 20813047.
    2. Unraveling the protective effect of a Drosophila phosphatidylethanolamine-binding protein upon bacterial infection by means of proteomics. Reumer A, et al. Dev Comp Immunol, 2009 Nov. PMID 19545586.
    3. Selection for cold resistance alters gene transcript levels in Drosophila melanogaster. Telonis-Scott M, et al. J Insect Physiol, 2009 Jun. PMID 19232407.
    4. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    5. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.

    See all (12) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:60058 BioGRID:62121 CG13159    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:61362 CG2201    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:66852 CG3508    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:64349 CG7197    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:62403 Cyp6a23    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:61232 Hakai    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:66481 RpL3    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:60225 Spn28D    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:58141 brk    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:62691 eIF3-S8    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:59589 frtz    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:59242 l(1)G0156    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:63350 l(2)not    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:60715 nub    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:68774 pwn    BioGRID  PubMed Two-hybrid 
    BioGRID:60058 BioGRID:68777 sol    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG16947 gene: The CG16947 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, K.lactis, S.pombe, A.thaliana, and rice.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG16947 gene product from transcript CG16947-RA
    Names
    CG16947
    CG16947-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      6459079..6463843, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135186.1 → NP_609030.1  CG16947 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VMD4
      Related
      FBpp0078901, FBtr0079271
      Conserved Domains (3) summary
      COG4357
      Location:184 – 246
      Blast Score: 82
      COG4357; Zinc finger domain containing protein (CHY type) [Function unknown]
      pfam05495
      Location:184 – 258
      Blast Score: 218
      zf-CHY; CHY zinc finger
      cl15348
      Location:311 – 356
      Blast Score: 95
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AAF52385.2
    mRNA BT088896.1 ACS94568.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VMD4.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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