RpL38 Ribosomal protein L38 [Drosophila melanogaster] - Gene

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Summary

Official Symbol: RpL38provided by Flybase
Official Full Name: Ribosomal protein L38provided by Flybase
Primary source: FLYBASE:FBgn0040007
Locus tag: Dmel_CG18001
Gene type: protein coding
RNA name: ribosomal protein L38
RefSeq status: REVIEWED
Organism: Drosophila melanogaster
Lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as: 41Af; 41Ag; BcDNA:RE42506; CG18001; CG40278; Dmel\CG18001; E-2b; GroupIV; l(2)41Af; l(2)41Ag; l(2)41Ai; l(2)EMS4-72; l(2)EMS45-72; l(2R)A'; M(2)41A; M(2)S2; M(2)S3

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Genomic context

Location :: 41A2-41A2; 2-55.1 cM

Sequence :: Chromosome: 2R; NT_033778.3 (403502..403961, complement)

See RpL38 in Epigenomics, MapViewer

Chromosome 2R - NT_033778.3 Genomic Context describing neighboring genes

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Genomic regions, transcripts, and products

Genomic Sequence

Go to nucleotideGraphics FASTA GenBank

Go to reference sequence details

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Bibliography

GeneRIFs: Gene References Into Functions What's a GeneRIF?

RpL38, located in the centric heterochromatin of chromosome 2, was analyzed genetically.
Title: Genetic analysis of RpL38 and RpL5, two minute genes located in the centric heterochromatin of chromosome 2 of Drosophila melanogaster.

Submit: New GeneRIF Correction

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Interactions

Products	Interactant	Other Gene	Source	Pubs	Description
BioGRID:78269	BioGRID:62196	CG13322	BioGRID	PubMed	Two-hybrid
BioGRID:78269	BioGRID:61445	CG14589	BioGRID	PubMed	Two-hybrid
BioGRID:78269	BioGRID:60765	CG15479	BioGRID	PubMed	Two-hybrid
BioGRID:78269	BioGRID:72783	CG3021	BioGRID	PubMed	Two-hybrid
BioGRID:78269	BioGRID:66589	CG4810	BioGRID	PubMed	Two-hybrid
BioGRID:78269	BioGRID:60880	CSN1a	BioGRID	PubMed	Two-hybrid
BioGRID:78269	BioGRID:63418	Chi	BioGRID	PubMed	Phenotypic Enhancement
BioGRID:78269	BioGRID:57823	N	BioGRID	PubMed	Phenotypic Enhancement; Phenotypic Suppression
BioGRID:78269	BioGRID:68066	Sld5	BioGRID	PubMed	Two-hybrid
BioGRID:78269	BioGRID:58951	Traf-like	BioGRID	PubMed	Two-hybrid
BioGRID:78269	BioGRID:69119	ct	BioGRID	PubMed	Phenotypic Enhancement
BioGRID:78269	BioGRID:61396	gus	BioGRID	PubMed	Two-hybrid
BioGRID:78269	BioGRID:62308	mam	BioGRID	PubMed	Phenotypic Enhancement
BioGRID:78269	BioGRID:59347	run	BioGRID	PubMed	Phenotypic Enhancement
BioGRID:78269	BioGRID:62192	vg	BioGRID	PubMed	Phenotypic Enhancement
BioGRID:78269	BioGRID:57766	z	BioGRID	PubMed	Phenotypic Enhancement

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General gene information

Pathways from BioSystems

Cap-dependent Translation Initiation, organism-specific biosystem (from REACTOME)
Cap-dependent Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem (from WikiPathways)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem
Cytoplasmic Ribosomal Proteins
Eukaryotic Translation Elongation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Initiation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Termination, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Termination, organism-specific biosystemcomputationally inferred pathway (not manually curated)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystem (from REACTOME)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Gene Expression, organism-specific biosystem (from REACTOME)
Gene Expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystem (from REACTOME)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Metabolism of proteins, organism-specific biosystem (from REACTOME)
Metabolism of proteins, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Peptide chain elongation, organism-specific biosystem (from REACTOME)
Peptide chain elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosome, organism-specific biosystem (from KEGG)
Ribosome, organism-specific biosystem
Ribosome
Ribosome, conserved biosystem (from KEGG)
Ribosome, conserved biosystem
Ribosome
Ribosome, eukaryotes, organism-specific biosystem (from KEGG)
Ribosome, eukaryotes, organism-specific biosystemStructural complex; Genetic information processing; Ribosome
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystem (from REACTOME)
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Translation, organism-specific biosystem (from REACTOME)
Translation, organism-specific biosystemcomputationally inferred pathway (not manually curated)

Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

Gene Ontology Provided by FlyBase

Function	Evidence Code	Pubs
structural constituent of ribosome	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
translation	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
cytosolic large ribosomal subunit	ISS Inferred from Sequence or Structural Similarity more info
ribosome	IDA Inferred from Direct Assay more info	PubMed

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General protein information

Preferred Names: CG18001 gene product from transcript CG18001-RA

Names: CG18001-PA; Minute(2)41A; RpL38-PA; enhancer on chromosome 2, complementation group b; lethal(2)41Af; nipped; ribosomal protein 38; ribosomal protein L38

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NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NT_033778.3

Range

403502..403961, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001042975.1 → NP_001036440.1 ribosomal protein L38 [Drosophila melanogaster]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9W5N2

Related

FBpp0110412, FBtr0111120

Conserved Domains (1) summary

cl03352
Location:2 – 69
Blast Score: 232

Ribosomal_L38e; Ribosomal L38e protein family