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HTR1F 5-hydroxytryptamine receptor 1F [ Homo sapiens (human) ]

Gene ID: 3355, updated on 12-May-2016
Official Symbol
HTR1Fprovided by HGNC
Official Full Name
5-hydroxytryptamine receptor 1Fprovided by HGNC
Primary source
HGNC:HGNC:5292
See related
Ensembl:ENSG00000179097 HPRD:01637; MIM:182134
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
5HT6; MR77; 5-HT1F; HTR1EL; 5-HT-1F
Orthologs
Location:
3p12
Exon count:
7
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 3 NC_000003.12 (87792767..87994856)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (87841929..88043964)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, ATPase 1 pseudogene 6 Neighboring gene uncharacterized LOC105377198 Neighboring gene zinc finger protein Rlf-like Neighboring gene CGG triplet repeat binding protein 1 Neighboring gene chromobox 5 pseudogene 1 Neighboring gene zinc finger protein 654

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Amine ligand-binding receptors, organism-specific biosystem (from REACTOME)
    Amine ligand-binding receptors, organism-specific biosystemThe class A (rhodopsin-like) GPCRs that bind to classical biogenic amine ligands are annotated here. The amines involved (acetylcholine, adrenaline, noradrenaline, dopamine, serotonin and histamine)...
  • Class A/1 (Rhodopsin-like receptors), organism-specific biosystem (from REACTOME)
    Class A/1 (Rhodopsin-like receptors), organism-specific biosystemRhodopsin-like receptors (class A/1) are the largest group of GPCRs and are the best studied group from a functional and structural point of view. They show great diversity at the sequence level and ...
  • G alpha (i) signalling events, organism-specific biosystem (from REACTOME)
    G alpha (i) signalling events, organism-specific biosystemThe classical signalling mechanism for G alpha (i) is inhibition of the cAMP dependent pathway through inhibition of adenylate cyclase. Decreased production of cAMP from ATP results in decreased act...
  • GPCR downstream signaling, organism-specific biosystem (from REACTOME)
    GPCR downstream signaling, organism-specific biosystemG protein-coupled receptors (GPCRs) are classically defined as the receptor, G-protein and downstream effectors, the alpha subunit of the G-protein being the primary signaling molecule. However, it h...
  • GPCR ligand binding, organism-specific biosystem (from REACTOME)
    GPCR ligand binding, organism-specific biosystemThere are more than 800 G-protein coupled receptor (GPCRs) in the human genome, making it the largest receptor superfamily. GPCRs are also the largest class of drug targets, involved in virtually all...
  • GPCRs, Class A Rhodopsin-like, organism-specific biosystem (from WikiPathways)
    GPCRs, Class A Rhodopsin-like, organism-specific biosystemThis pathway was created using the GPCRDB (Horn et al., 1998), http://www.cmbi.kun.nl/7tm/. The groupings are based on the GPCR phylogenetic tree available from the GPCRDB and the training sets used ...
  • GPCRs, Other, organism-specific biosystem (from WikiPathways)
    GPCRs, Other, organism-specific biosystemThis pathway was created using the GPCRDB (Horn et al., 1998), http://www.cmbi.kun.nl/7tm/. The groupings are based on the GPCR phylogenetic tree available from the GPCRDB and the training sets used ...
  • Monoamine GPCRs, organism-specific biosystem (from WikiPathways)
    Monoamine GPCRs, organism-specific biosystem
    Monoamine GPCRs
  • Neuroactive ligand-receptor interaction, organism-specific biosystem (from KEGG)
    Neuroactive ligand-receptor interaction, organism-specific biosystem
    Neuroactive ligand-receptor interaction
  • Neuroactive ligand-receptor interaction, conserved biosystem (from KEGG)
    Neuroactive ligand-receptor interaction, conserved biosystem
    Neuroactive ligand-receptor interaction
  • Serotonergic synapse, organism-specific biosystem (from KEGG)
    Serotonergic synapse, organism-specific biosystemSerotonin (5-Hydroxytryptamine, 5-HT) is a monoamine neurotransmitter that plays important roles in physiological functions such as learning and memory, emotion, sleep, pain, motor function and endoc...
  • Serotonin receptors, organism-specific biosystem (from REACTOME)
    Serotonin receptors, organism-specific biosystemSerotonin (5-HT) is a monoamine neurotransmitter that plays an important role as a modulator of anger, aggression, body temperature, mood, sleep, sexuality, appetite, metabolism, as well as stimulati...
  • Signal Transduction, organism-specific biosystem (from REACTOME)
    Signal Transduction, organism-specific biosystemSignal transduction is a process in which extracellular signals elicit changes in cell state and activity. Transmembrane receptors sense changes in the cellular environment by binding ligands, such a...
  • Signaling by GPCR, organism-specific biosystem (from REACTOME)
    Signaling by GPCR, organism-specific biosystemG protein-coupled receptors (GPCRs; 7TM receptors; seven transmembrane domain receptors; heptahelical receptors; G protein-linked receptors [GPLR]) are the largest family of transmembrane receptors i...
  • Taste transduction, organism-specific biosystem (from KEGG)
    Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • Taste transduction, conserved biosystem (from KEGG)
    Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • cAMP signaling pathway, organism-specific biosystem (from KEGG)
    cAMP signaling pathway, organism-specific biosystemcAMP is one of the most common and universal second messengers, and its formation is promoted by adenylyl cyclase (AC) activation after ligation of G protein-coupled receptors (GPCRs) by ligands incl...
  • cAMP signaling pathway, conserved biosystem (from KEGG)
    cAMP signaling pathway, conserved biosystemcAMP is one of the most common and universal second messengers, and its formation is promoted by adenylyl cyclase (AC) activation after ligation of G protein-coupled receptors (GPCRs) by ligands incl...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
G-protein coupled serotonin receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
G-protein coupled serotonin receptor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
serotonin binding IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
integral component of plasma membrane IMP
Inferred from Mutant Phenotype
more info
PubMed 
plasma membrane TAS
Traceable Author Statement
more info
 
Preferred Names
5-hydroxytryptamine receptor 1F
Names
5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled
serotonin receptor 1F

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_000866.4NP_000857.1  5-hydroxytryptamine receptor 1F

    See identical proteins and their annotated locations for NP_000857.1

    Status: VALIDATED

    Description
    Transcript Variant: Variants 1 through 4 encode the same protein.
    Source sequence(s)
    AC119733, AC132004, BC069125, BX357988, CA942616
    Consensus CDS
    CCDS2920.1
    UniProtKB/Swiss-Prot
    P30939
    Related
    ENSP00000322924, OTTHUMP00000213850, ENST00000319595, OTTHUMT00000352890
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  2. NM_001322208.1NP_001309137.1  5-hydroxytryptamine receptor 1F

    Status: VALIDATED

    Description
    Transcript Variant: Variants 1 through 4 encode the same protein.
    Source sequence(s)
    AC117513, AC119034, AC119733
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  3. NM_001322209.1NP_001309138.1  5-hydroxytryptamine receptor 1F

    Status: VALIDATED

    Description
    Transcript Variant: Variants 1 through 4 encode the same protein.
    Source sequence(s)
    AC117513, AC119034, AC119733
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  4. NM_001322210.1NP_001309139.1  5-hydroxytryptamine receptor 1F

    Status: VALIDATED

    Description
    Transcript Variant: Variants 1 through 4 encode the same protein.
    Source sequence(s)
    AC117513, AC119034, AC119733
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p2 Primary Assembly

    Range
    87792767..87994856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005264749.2XP_005264806.1  

    UniProtKB/Swiss-Prot
    P30939
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  2. XM_011533666.1XP_011531968.1  

    See identical proteins and their annotated locations for XP_011531968.1

    UniProtKB/Swiss-Prot
    P30939
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  3. XM_005264747.2XP_005264804.1  

    UniProtKB/Swiss-Prot
    P30939
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  4. XM_005264748.3XP_005264805.1  

    UniProtKB/Swiss-Prot
    P30939
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  5. XM_011533664.1XP_011531966.1  

    See identical proteins and their annotated locations for XP_011531966.1

    UniProtKB/Swiss-Prot
    P30939
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  6. XM_011533665.1XP_011531967.1  

    See identical proteins and their annotated locations for XP_011531967.1

    UniProtKB/Swiss-Prot
    P30939
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  7. XM_005264750.2XP_005264807.1  

    See identical proteins and their annotated locations for XP_005264807.1

    UniProtKB/Swiss-Prot
    P30939
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor
  8. XM_005264751.2XP_005264808.1  

    See identical proteins and their annotated locations for XP_005264808.1

    UniProtKB/Swiss-Prot
    P30939
    Conserved Domains (2) summary
    pfam00001
    Location:46347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33155
    7tm_4; Olfactory receptor

Alternate CHM1_1.1

Genomic

  1. NC_018914.2 Alternate CHM1_1.1

    Range
    87984884..87996051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)