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    HTR1B 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled [ Homo sapiens ]

    Gene ID: 3351, updated on 11-May-2012

    Summary

    Official Symbol
    HTR1Bprovided by HGNC
    Official Full Name
    5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupledprovided by HGNC
    Primary source
    HGNC:5287
    See related
    Ensembl:ENSG00000135312; HPRD:01634; MIM:182131; Vega:OTTHUMG00000015066
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    S12; 5-HT1B; HTR1D2; HTR1DB; 5-HT1DB
    Summary
    The neurotransmitter serotonin (5-hydroxytryptamine; 5-HT) exerts a wide variety of physiologic functions through a multiplicity of receptors and may be involved in human neuropsychiatric disorders such as anxiety, depression, or migraine. These receptors consist of several main groups subdivided into several distinct subtypes on the basis of their pharmacologic characteristics, coupling to intracellular second messengers, and distribution within the nervous system (Zifa and Fillion, 1992 [PubMed 1359584]). The serotonergic receptors belong to the multigene family of receptors coupled to guanine nucleotide-binding proteins.[supplied by OMIM, Oct 2009]

    Genomic context

    Location :
    6q13
    Sequence :
    Chromosome: 6; NC_000006.11 (78171948..78173120, complement)
    See HTR1B in Epigenomics, MapViewer

    Chromosome 6 - NC_000006.11Genomic Context describing neighboring genes Neighboring gene interphotoreceptor matrix proteoglycan 1 Neighboring gene 52 kDa repressor of the inhibitor of the protein kinase-like Neighboring gene ribosomal protein S6 pseudogene 7 Neighboring gene interleukin-1 receptor-associated kinase 1 binding protein 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_000854.1 NP_000515.2 HTR1A    BIND  PubMed 5-HT1A interacts with 5-HT1B. This interaction was modeled on a demonstrated interaction between 5-HT1A and 5-HT1B from an unspecified species. 
    NP_000854.1 NP_000854.1 HTR1B    BIND  PubMed 5-HT1B homodimerizes. This interaction was modeled on a demonstrated interaction between two 5-HT1B molecules from an unspecified species. 
    NP_000854.1 NP_000855.1 HTR1D    BIND  PubMed 5-HT1D interacts with 5-HT1B. This interaction was modeled on a demonstrated interaction between 5-HT1D and 5-HT1B from an unspecified species. 
    P28222 P08908 HTR1A    HPRD  PubMed  
    P28222 P28222 HTR1B    HPRD  PubMed  
    P28222 P28221 HTR1D    HPRD  PubMed  
    BioGRID:109583 BioGRID:131875 GSTK1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:109583 BioGRID:109584 HTR1D    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:109583 BioGRID:110895 NME2    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    • Amine ligand-binding receptors, organism-specific biosystem (from REACTOME)
      Amine ligand-binding receptors, organism-specific biosystemThe class A (rhodopsin-like) GPCRs that bind to classical biogenic amine ligands are annotated here. The amines involved (acetylcholine, adrenaline, noradrenaline, dopamine, serotonin and histamine)...
    • Class A/1 (Rhodopsin-like receptors), organism-specific biosystem (from REACTOME)
      Class A/1 (Rhodopsin-like receptors), organism-specific biosystemRhodopsin-like receptors (class A/1) are the largest group of GPCRs and are the best studied group from a functional and structural point of view. They show great diversity at the sequence level and ...
    • G alpha (i) signalling events, organism-specific biosystem (from REACTOME)
      G alpha (i) signalling events, organism-specific biosystemThe classical signalling mechanism for G alpha (i) is inhibition of the cAMP dependent pathway through inhibition of adenylate cyclase. Decreased production of cAMP from ATP results in decreased act...
    • GPCR downstream signaling, organism-specific biosystem (from REACTOME)
      GPCR downstream signaling, organism-specific biosystemG protein-coupled receptors (GPCRs) are classically defined as the receptor, G-protein and downstream effectors, the alpha subunit of the G-protein being the primary signaling molecule. However, it h...
    • GPCR ligand binding, organism-specific biosystem (from REACTOME)
      GPCR ligand binding, organism-specific biosystemThere are more than 800 G-protein coupled receptor (GPCRs) in the human genome, making it the largest receptor superfamily. GPCRs are also the largest class of drug targets, involved in virtually all...
    • GPCRs, Class A Rhodopsin-like, organism-specific biosystem (from WikiPathways)
      GPCRs, Class A Rhodopsin-like, organism-specific biosystemThis pathway was created using the GPCRDB (Horn et al., 1998), http://www.cmbi.kun.nl/7tm/. The groupings are based on the GPCR phylogenetic tree available from the GPCRDB and the training sets used ...
    • Monoamine GPCRs, organism-specific biosystem (from WikiPathways)
      Monoamine GPCRs, organism-specific biosystem
      Monoamine GPCRs
    • Neuroactive ligand-receptor interaction, organism-specific biosystem (from KEGG)
      Neuroactive ligand-receptor interaction, organism-specific biosystem
      Neuroactive ligand-receptor interaction
    • Neuroactive ligand-receptor interaction, conserved biosystem (from KEGG)
      Neuroactive ligand-receptor interaction, conserved biosystem
      Neuroactive ligand-receptor interaction
    • Serotonergic synapse, organism-specific biosystem (from KEGG)
      Serotonergic synapse, organism-specific biosystemSerotonin (5-Hydroxytryptamine, 5-HT) is a monoamine neurotransmitter that plays important roles in physiological functions such as learning and memory, emotion, sleep, pain, motor function and endoc...
    • Serotonin receptors, organism-specific biosystem (from REACTOME)
      Serotonin receptors, organism-specific biosystemSerotonin (5-HT) is a monoamine neurotransmitter that plays an important role as a modulator of anger, aggression, body temperature, mood, sleep, sexuality, appetite, metabolism, as well as stimulati...
    • Signal Transduction, organism-specific biosystem (from REACTOME)
      Signal Transduction, organism-specific biosystemSignal transduction is a process in which extracellular signals elicit changes in cell state and activity. Transmembrane receptors sense changes in the cellular environment by binding ligands, such a...
    • Signaling by GPCR, organism-specific biosystem (from REACTOME)
      Signaling by GPCR, organism-specific biosystemG protein-coupled receptors (GPCRs; 7TM receptors; seven transmembrane domain receptors; heptahelical receptors; G protein-linked receptors [GPLR]) are the largest family of transmembrane receptors i...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    G-protein coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    drug binding IEA
    Inferred from Electronic Annotation
    more info
     
    receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    serotonin binding IEA
    Inferred from Electronic Annotation
    more info
     
    serotonin receptor activity TAS
    Traceable Author Statement
    more info
    PubMed 
    signal transducer activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    G-protein coupled receptor internalization IEA
    Inferred from Electronic Annotation
    more info
     
    G-protein coupled receptor signaling pathway TAS
    Traceable Author Statement
    more info
    PubMed 
    G-protein signaling, coupled to cyclic nucleotide second messenger TAS
    Traceable Author Statement
    more info
    PubMed 
    activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    bone remodeling IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to temperature stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    drinking behavior IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of cAMP biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of synaptic transmission, GABAergic IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of synaptic transmission, glutamatergic IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of dopamine secretion IEA
    Inferred from Electronic Annotation
    more info
     
    response to cocaine IEA
    Inferred from Electronic Annotation
    more info
     
    response to drug IEA
    Inferred from Electronic Annotation
    more info
     
    response to ethanol IEA
    Inferred from Electronic Annotation
    more info
     
    response to mineralocorticoid stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    response to toxin IEA
    Inferred from Electronic Annotation
    more info
     
    serotonin receptor signaling pathway TAS
    Traceable Author Statement
    more info
    PubMed 
    synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    integral to plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    plasma membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    5-hydroxytryptamine receptor 1B
    Names
    5-hydroxytryptamine receptor 1B
    5-HT-1B
    5-HT-1D-beta
    serotonin receptor 1B
    serotonin 1D beta receptor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_000863.1NP_000854.1  5-hydroxytryptamine receptor 1B

      Status: PROVISIONAL

      Source sequence(s)
      D10995
      Consensus CDS
      CCDS4986.1
      UniProtKB/Swiss-Prot
      P28222
      Related
      ENSP00000358963, OTTHUMP00000016769, ENST00000369947, OTTHUMT00000041292
      Conserved Domains (2) summary
      pfam00001
      Location:72369
      Blast Score: 563
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl10458
      Location:67186
      Blast Score: 88
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000006.11 Reference GRCh37.p5 Primary Assembly

      Range
      78171948..78173120, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000138.1 Alternate HuRef

      Range
      75364405..75365577, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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