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larp6 La ribonucleoprotein domain family, member 6 [ Danio rerio (zebrafish) ]

Gene ID: 334471, updated on 21-May-2014
Official Symbol
larp6provided by ZNC
Official Full Name
La ribonucleoprotein domain family, member 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6403
Locus tag
ZFOS-508H5.1
See related
Ensembl:ENSDARG00000005355; Vega:OTTDARG00000028864
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fi75f12; zgc:66107; wu:fi75f12
Annotation information
Annotation category: partial on reference assembly
See larp6 in MapViewer
Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Zv9 (GCF_000002035.4) 18 NC_007129.5 (345027..355128, complement)

Chromosome 18 - NC_007129.5Genomic Context describing neighboring genes Neighboring gene threonyl-tRNA synthetase-like Neighboring gene TM2 domain containing 3 Neighboring gene synaptotagmin-1-like Neighboring gene poly [ADP-ribose] polymerase 6-like

Genomic Sequence:
NC_007129.5 chromosome 18 reference Zv9 Primary Assembly

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
RNA processing IEA
Inferred from Electronic Annotation
more info
 
somitogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
la-related protein 6
Names
la-related protein 6
achn
acheron
ZFOS-508H5.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199903.1NP_956197.1  la-related protein 6

    See proteins identical to NP_956197.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056595
    UniProtKB/TrEMBL
    Q6PHD4
    Related
    ENSDARP00000114792, OTTDARP00000031598, ENSDART00000140897, OTTDART00000039501
    Conserved Domains (3) summary
    cd08033
    Location:79155
    Blast Score: 385
    LARP_6; La RNA-binding domain of La-related protein 6
    pfam12901
    Location:441472
    Blast Score: 108
    SUZ-C; SUZ-C motif
    cd12289
    Location:200284
    Blast Score: 315
    RRM_LARP6; RNA recognition motif in La-related protein 6 (LARP6) and similar proteins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zv9 Primary Assembly

Genomic

  1. NC_007129.5 

    Range
    345027..355128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)