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    chinmo Chronologically inappropriate morphogenesis [ Drosophila melanogaster ]

    Gene ID: 33343, updated on 10-May-2012
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    Summary

    Official Symbol
    chinmoprovided by Flybase
    Official Full Name
    Chronologically inappropriate morphogenesisprovided by Flybase
    Primary source
    FLYBASE:FBgn0086758
    Locus tag
    Dmel_CG31666
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG10871; CG17156; CG17649; CG31666; Chinmo; Dmel\CG31666; F; l(2)04111
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    Genomic context

    Location :
    22A5-22B1
    Sequence :
    Chromosome: 2L; NT_033779.4 (1651260..1704682)
    See chinmo in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG14352 gene product from transcript CG14352-RA Neighboring gene Rieske iron-sulfur protein Neighboring gene CG17660 gene product from transcript CG17660-RA Neighboring gene capping protein beta

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. Weake VM, et al. Genes Dev, 2011 Jul 15. PMID 21764853.
    2. The transcriptional diversity of 25 Drosophila cell lines. Cherbas L, et al. Genome Res, 2011 Feb. PMID 21177962.
    3. chinmo is a functional effector of the JAK/STAT pathway that regulates eye development, tumor formation, and stem cell self-renewal in Drosophila. Flaherty MS, et al. Dev Cell, 2010 Apr 20. PMID 20412771.
    4. Twin-spot MARCM to reveal the developmental origin and identity of neurons. Yu HH, et al. Nat Neurosci, 2009 Jul. PMID 19525942.
    5. Genome-wide expression profiling in the Drosophila eye reveals unexpected repression of notch signaling by the JAK/STAT pathway. Flaherty MS, et al. Dev Dyn, 2009 Sep. PMID 19504457.

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. Chinmo is a key effector of JAK/STAT signaling in a variety of developmental and pathological contexts
      Title: chinmo is a functional effector of the JAK/STAT pathway that regulates eye development, tumor formation, and stem cell self-renewal in Drosophila.
    2. identified novel BTB-zinc finger protein, Chinmo, governing neuronal temporal identity during postembryonic brain development; results suggest temporal gradient of Chinmo helps specify distinct birth order-dependent cell fates in a neuronal lineage
      Title: Gradients of the Drosophila Chinmo BTB-zinc finger protein govern neuronal temporal identity.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:59585 BioGRID:68273 CG12558    BioGRID  PubMed Two-hybrid 
    BioGRID:59585 BioGRID:58464 CG18292    BioGRID  PubMed Two-hybrid 
    BioGRID:59585 BioGRID:63701 CG2199    BioGRID  PubMed Two-hybrid 
    BioGRID:59585 BioGRID:68662 CG32016    BioGRID  PubMed Two-hybrid 
    BioGRID:59585 BioGRID:63161 Oatp58Db    BioGRID  PubMed Two-hybrid 
    BioGRID:59585 BioGRID:57676 a6    BioGRID  PubMed Two-hybrid 
    BioGRID:59585 BioGRID:70919 betaggt-II    BioGRID  PubMed Two-hybrid 
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    General gene information

    Markers

    mobile_element

    • Loc: 1679032-1686439 mobile_element_type = transposon:blood{}289

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    sequence-specific DNA binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    dendrite morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		  
    mushroom body development IMP
    Inferred from Mutant Phenotype
    more info
    		  
    Component Evidence Code Pubs
    intracellular IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG31666 gene product from transcript CG31666-RH
    Names
    CG31666-PA
    CG31666-PD
    CG31666-PE
    CG31666-PF
    CG31666-PG
    CG31666-PH
    chinmo
    chinmo-PA
    chinmo-PD
    chinmo-PE
    chinmo-PF
    chinmo-PG
    chinmo-PH
    chronologically inappropriate morphogenesis
    lethal (2) 04111
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      1651260..1704682
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001258910.1 → NP_001245839.1  chronologically inappropriate morphogenesis, isoform H [Drosophila melanogaster]

      Status: REVIEWED

    2. NM_001201751.1 → NP_001188680.1  chronologically inappropriate morphogenesis, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KU09
      Conserved Domains (1) summary
      cl02518
      Location:22 – 116
      Blast Score: 230
      BTB; BTB/POZ domain

    3. NM_164429.2 → NP_722718.1  chronologically inappropriate morphogenesis, isoform G [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VQ30
      Related
      FBpp0077548
      Conserved Domains (1) summary
      cl02518
      Location:22 – 116
      Blast Score: 228
      BTB; BTB/POZ domain

    4. NM_164430.3 → NP_722719.1  chronologically inappropriate morphogenesis, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VQ30
      Related
      FBpp0077545
      Conserved Domains (1) summary
      cl02518
      Location:22 – 116
      Blast Score: 228
      BTB; BTB/POZ domain

    5. NM_164428.3 → NP_722717.2  chronologically inappropriate morphogenesis, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KU09
      Conserved Domains (1) summary
      cl02518
      Location:22 – 116
      Blast Score: 230
      BTB; BTB/POZ domain

    6. NM_134766.5 → NP_608610.1  chronologically inappropriate morphogenesis, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VQ30
      Related
      FBpp0077546
      Conserved Domains (1) summary
      cl02518
      Location:22 – 116
      Blast Score: 228
      BTB; BTB/POZ domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AFH03516.1
    genomic AE014134.5 AAF51351.3
    genomic AE014134.5 ADV36931.1
    mRNA AY060464.1 AAL25503.1
    mRNA BT050405.1 ACI88731.1
    genomic AE014134.5 AAF51350.2
    genomic AE014134.5 AAF51352.3
    genomic AE014134.5 AAN10454.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    AAF51351.1 GenPept
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    Additional Links

    Gene LinkOut

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