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    CG4552 [ Drosophila melanogaster ]

    Gene ID: 33289, updated on 9-May-2012
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    Summary

    Official Symbol
    CG4552provided by Flybase
    Primary source
    FLYBASE:FBgn0031304
    Locus tag
    Dmel_CG4552
    Gene type
    protein coding
    RNA name
    CG4552
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG4552
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    Genomic context

    Location :
    21F1-21F1
    Sequence :
    Chromosome: 2L; NT_033779.4 (1129235..1132413)
    See CG4552 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene CG14340 gene product from transcript CG14340-RA Neighboring gene Pinocchio Neighboring gene CG4715 gene product from transcript CG4715-RA Neighboring gene CG4577 gene product from transcript CG4577-RA Neighboring gene CG4726 gene product from transcript CG4726-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Identification of Drosophila gene products required for phagocytosis of Candida albicans. Stroschein-Stevenson SL, et al. PLoS Biol, 2006 Jan. PMID 16336044.
    4. Positive selection of Iris, a retroviral envelope-derived host gene in Drosophila melanogaster. Malik HS, et al. PLoS Genet, 2005 Oct. PMID 16244705.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (14) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:59542 BioGRID:58854 CG8128    BioGRID  PubMed Two-hybrid 
    BioGRID:59542 BioGRID:60245 CG8455    BioGRID  PubMed Two-hybrid 
    BioGRID:59542 BioGRID:61846 Orc6    BioGRID  PubMed Two-hybrid 
    BioGRID:59542 BioGRID:57919 Pp2C1    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG4552 gene: The CG4552 gene is conserved in human, chimpanzee, , dog, cow, mouse, chicken, zebrafish, mosquito, and C.elegans.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    Rab GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    phagocytosis, engulfment IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    regulation of Rab GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    intracellular IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG4552 gene product from transcript CG4552-RA
    Names
    CG4552
    CG4552-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      1129235..1132413
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_134725.1 → NP_608569.1  CG4552 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VPW9
      Related
      FBpp0077621, FBtr0077956
      Conserved Domains (2) summary
      cl02495
      Location:34 – 233
      Blast Score: 299
      RabGAP-TBC; Rab-GTPase-TBC domain
      cl00125
      Location:330 – 429
      Blast Score: 90
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AAF51416.2
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VPW9.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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