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CG13950 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 33267, updated on 4-Apr-2024

Summary

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Official Symbol
CG13950provided by FlyBase
Primary source
FLYBASE:FBgn0031289
Locus tag
Dmel_CG13950
See related
AllianceGenome:FB:FBgn0031289
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG13950
Summary
Predicted to enable carbohydrate binding activity. Is expressed in adult head. Orthologous to several human genes including CLC (Charcot-Leyden crystal galectin); LGALS13 (galectin 13); and LGALS14 (galectin 14). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
21E2-21E2; 2-1.5 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (860197..861806)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (860309..861806)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR45345 Neighboring gene mir-375 stem loop Neighboring gene arouser Neighboring gene dribble

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Galectinomics: finding themes in complexity. Cooper DN. Biochim Biophys Acta, 2002 Sep 19. PMID 12223271
  2. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235
  3. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
  4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
  5. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables carbohydrate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG13950-PA
CG13950-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    860197..861806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001347748.1 → NP_001334728.1  uncharacterized protein Dmel_CG13950, isoform B [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VPU6

  2. NM_134709.2 → NP_608553.1  uncharacterized protein Dmel_CG13950, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_608553.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VPU6
    Related
    FBpp0077683
    Conserved Domains (1) summary
    pfam00337
    Location:4 → 145
    Gal-bind_lectin; Galactoside-binding lectin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VPU6 Q9VPU6

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