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    Cda5 Chitin deacetylase-like 5 [ Drosophila melanogaster ]

    Gene ID: 33158, updated on 11-May-2012
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    Summary

    Official Symbol
    Cda5provided by Flybase
    Official Full Name
    Chitin deacetylase-like 5provided by Flybase
    Primary source
    FLYBASE:FBgn0051973
    Locus tag
    Dmel_CG31973
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RH43162; CG2761; CG2776; CG31973; DmCDA5; Dmel\CG31973
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    Genomic context

    Location :
    21B1-21B1
    Sequence :
    Chromosome: 2L; NT_033779.4 (25402..59242, complement)
    See Cda5 in Epigenomics, MapViewer

    Chromosome 2L - NT_033779.4Genomic Context describing neighboring genes Neighboring gene lethal (2) giant larvae Neighboring gene ncRNA Neighboring gene Ionotropic receptor 21a Neighboring gene debra Neighboring gene CG11372 gene product from transcript CG11372-RD

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Domain organization and phylogenetic analysis of proteins from the chitin deacetylase gene family of Tribolium castaneum and three other species of insects. Dixit R, et al. Insect Biochem Mol Biol, 2008 Apr. PMID 18342249.
    2. Conditional switches for extracellular matrix patterning in Drosophila melanogaster. Khokhar A, et al. Genetics, 2008 Mar. PMID 18245854.
    3. Abnormalities in cell proliferation and apico-basal cell polarity are separable in Drosophila lgl mutant clones in the developing eye. Grzeschik NA, et al. Dev Biol, 2007 Nov 1. PMID 17870065.
    4. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    5. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:59423 BioGRID:70921 Abd-B    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:67857 CG13625    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:533580 CG14425    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:65751 CG14641    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:65537 CG5104    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:66319 CG8301    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:66807 CG9624    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:58246 Cp36    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:58247 Cp38    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:67425 Cpr92F    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:67143 Hmx    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:58050 Spx    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:63374 TBPH    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:68605 ci    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:67755 eIF4G2    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:60868 elB    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:57548 ewg    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:64769 eyg    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:63243 fd59A    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:62647 l(2)k01209    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:72097 mod(mdg4)    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:68829 sns    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:65697 srpk79D    BioGRID  PubMed Two-hybrid 
    BioGRID:59423 BioGRID:60906 stc    BioGRID  PubMed Two-hybrid 
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    General gene information

    mobile_element

    • Loc: c27788-27530 mobile_element_type = transposon:INE-1{}1753

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    chitin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Preferred Names
    CG31973 gene product from transcript CG31973-RH
    Names
    CG31973-PA
    CG31973-PB
    CG31973-PE
    CG31973-PF
    CG31973-PG
    CG31973-PH
    CG31973-PI
    CG31973-PJ
    Cda5-PA
    Cda5-PB
    Cda5-PE
    Cda5-PF
    Cda5-PG
    Cda5-PH
    Cda5-PI
    Cda5-PJ
    chitin deacetylase-like 5
    NP_001097044.2
    NP_001097045.1
    NP_001245805.1
    NP_001245806.1
    NP_001245807.1
    NP_001245808.1
    NP_722589.1
    NP_722590.2
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.4

      Range
      25402..59242, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001258878.1 → NP_001245807.1  chitin deacetylase-like 5, isoform H [Drosophila melanogaster]

      Status: REVIEWED

    2. NM_001258879.1 → NP_001245808.1  chitin deacetylase-like 5, isoform I [Drosophila melanogaster]

      Status: REVIEWED

    3. NM_164353.1 → NP_722589.1  chitin deacetylase-like 5, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VPI4
      Related
      FBpp0077821, FBtr0078163
      Conserved Domains (2) summary
      cd10975
      Location:705 – 967
      Blast Score: 1155
      CE4_CDA_like_2; Putative catalytic domain of chitin deacetylase-like proteins
      cl02629
      Location:58 – 106
      Blast Score: 157
      CBM_14; Chitin binding Peritrophin-A domain

    4. NM_001103575.1 → NP_001097045.1  chitin deacetylase-like 5, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E8V4
      Related
      FBpp0112328, FBtr0113416
      Conserved Domains (2) summary
      cd10975
      Location:705 – 968
      Blast Score: 1123
      CE4_CDA_like_2; Putative catalytic domain of chitin deacetylase-like proteins
      cl02629
      Location:58 – 106
      Blast Score: 157
      CBM_14; Chitin binding Peritrophin-A domain

    5. NM_164354.2 → NP_722590.2  chitin deacetylase-like 5, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VPI3
      Related
      FBpp0077822, FBtr0078164
      Conserved Domains (2) summary
      cd10975
      Location:1664 – 1926
      Blast Score: 1168
      CE4_CDA_like_2; Putative catalytic domain of chitin deacetylase-like proteins
      cl02629
      Location:58 – 108
      Blast Score: 170
      CBM_14; Chitin binding Peritrophin-A domain

    6. NM_001258877.1 → NP_001245806.1  chitin deacetylase-like 5, isoform G [Drosophila melanogaster]

      Status: REVIEWED

    7. NM_001103574.2 → NP_001097044.2  chitin deacetylase-like 5, isoform J [Drosophila melanogaster]

      Status: REVIEWED

    8. NM_001258876.1 → NP_001245805.1  chitin deacetylase-like 5, isoform F [Drosophila melanogaster]

      Status: REVIEWED

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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014134.5 AFH03484.1
    genomic AE014134.5 AFH03485.1
    mRNA BT057995.1 ACM16705.1
    genomic AE014134.5 AAF51567.2
    genomic AE014134.5 ABI31281.1
    genomic AE014134.5 AAF51568.3
    genomic AE014134.5 AFH03483.1
    genomic AE014134.5 ABV53594.2
    genomic AE014134.5 AFH03482.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VPI4.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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