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    Syx16 Syntaxin 16 [ Drosophila melanogaster ]

    Gene ID: 33034, updated on 10-May-2012
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    Summary

    Official Symbol
    Syx16provided by Flybase
    Official Full Name
    Syntaxin 16provided by Flybase
    Primary source
    FLYBASE:FBgn0031106
    Locus tag
    Dmel_CG1467
    Gene type
    protein coding
    RNA name
    syntaxin 16
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG1467; Dm Syx16; Dmel\CG1467; DmSyx16; dSyx 16; dSyx16; Syx; SYX16
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    Genomic context

    Location :
    19C6-19C6
    Sequence :
    Chromosome: X; NC_004354.3 (20263361..20264807, complement)
    See Syx16 in Epigenomics, MapViewer

    Chromosome X - NC_004354.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene CG15460 gene product from transcript CG15460-RC Neighboring gene lethal (1) G0004 Neighboring gene CG11734 gene product from transcript CG11734-RC Neighboring gene CG15459 gene product from transcript CG15459-RA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573.
    2. Rich regulates target specificity of photoreceptor cells and N-cadherin trafficking in the Drosophila visual system via Rab6. Tong C, et al. Neuron, 2011 Aug 11. PMID 21835342.
    3. Dissecting the biological role of mucin-type O-glycosylation using RNA interference in Drosophila cell culture. Zhang L, et al. J Biol Chem, 2010 Nov 5. PMID 20807760.
    4. A dual function of V0-ATPase a1 provides an endolysosomal degradation mechanism in Drosophila melanogaster photoreceptors. Williamson WR, et al. J Cell Biol, 2010 May 31. PMID 20513768.
    5. The SM protein Car/Vps33A regulates SNARE-mediated trafficking to lysosomes and lysosome-related organelles. Akbar MA, et al. Mol Biol Cell, 2009 Mar. PMID 19158398.

    See all (29) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. syntaxin 16 may selectively regulate Golgi dynamics
      Title: Drosophila syntaxin 16 is a Q-SNARE implicated in Golgi dynamics.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:59325 BioGRID:68592 Acf1    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:66029 Ama    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:67154 AttD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:58653 Bap60    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63020 CG10543    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:58700 CG11164    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63867 CG11486    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:68306 CG11873    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:59058 CG12432    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:64968 CG13458    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:62844 CG15099    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:62860 CG15109    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:61844 CG1599    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:66295 CG16779    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:66123 CG2678    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:59491 CG2807    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:58072 CG3918    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:64915 CG3919    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:64758 CG4328    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:60729 CG5792    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:61438 CG7856    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63690 CG9149    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63036 CG9394    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:60739 CG9932    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:64905 D    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:64104 DnaJ-1    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:57914 HLH4C    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:62695 HPS4    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:68016 LpR2    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63381 PHDP    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:60754 Pect    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63961 Rcd5    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:57590 RpL22    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:57598 Sec22    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:59661 Slh    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:65495 Snap    BioGRID  PubMed Affinity Capture-MS; Two-hybrid 
    BioGRID:59325 BioGRID:66351 Snap24    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:78209 Snap25    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:68668 Sox102F    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:68939 SoxN    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:61901 Syb    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:64830 Syx13    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:67788 Syx1A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:57800 Syx4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:60977 Syx5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:65620 Syx6    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:61971 Syx7    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:65150 Syx8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:77830 Trl    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:61587 U2A    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:66312 Vps45    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63640 Vti1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:57896 bi    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:61453 bin3    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:58921 disco    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:72862 disco-r    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63438 enok    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:65132 fax    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63423 gammaSnap    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:67231 koko    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:64080 membrin    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:59325 BioGRID:70018 mts    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63862 scramb2    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:61853 sec24    BioGRID  PubMed Two-hybrid 
    BioGRID:59325 BioGRID:63369 usnp    BioGRID  PubMed Affinity Capture-MS 
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    General gene information

    Homology

    • Homologs of the Syx16 gene: The Syx16 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, C.elegans, S.cerevisiae, K.lactis, , S.pombe, , N.crassa, A.thaliana, and rice.

    Pathways from BioSystems

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    SNAP receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    SNAP receptor activity NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    neurotransmitter secretion NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    synaptic vesicle docking involved in exocytosis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    vesicle-mediated transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Golgi membrane IC
    Inferred by Curator
    more info
    		 PubMed 
    integral to membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    lysosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    plasma membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
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    General protein information

    Preferred Names
    CG1467 gene product from transcript CG1467-RA
    Names
    CG1467-PA
    Syx16-PA
    dSyntaxin16
    syntaxin
    syntaxin 16
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.3

      Range
      20263361..20264807, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078696.2 → NP_523420.1  syntaxin 16 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VR90
      Related
      FBpp0077022, FBtr0077330
      Conserved Domains (3) summary
      cd00193
      Location:262 – 320
      Blast Score: 139
      t_SNARE; Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in ...
      COG5325
      Location:212 – 343
      Blast Score: 206
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cl00143
      Location:56 – 128
      Blast Score: 107
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014298.4 AAF50914.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VR90.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content