U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

BF9343_2999 putative exported glycosyl hydrolase [ Bacteroides fragilis NCTC 9343 ]

Gene ID: 3286784, discontinued on 6-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

Go to the top of the page Help
Gene symbol
BF9343_2999
Gene description
putative exported glycosyl hydrolase
Locus tag
BF9343_2999
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacteroides fragilis NCTC 9343 (culture-collection: NCTC:9343)
Lineage
Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
NEW
Try the new Gene table
Try the new Transcript table

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003228.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Miscellaneous features

  • Loc: c3591290-3591267 PS00017 ATP/GTP-binding site motif A (P-loop).
  • Loc: c3592628-3591561 Pfam match to entry PF00728 Glyco_hydro_20, Glycosyl hydrolase family 20, catalytic domain, score 211.2, E-value 1.3e-60
  • Loc: c3593006-3592632 Pfam match to entry PF02838 Glyco_hydro_20b, Glycosyl hydrolase family 20, domain 2, score -1.0, E-value 0.00062
  • Loc: c3593099-3593040 Signal peptide predicted for BF3085 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.708 between residues 20 and 21

General protein information

Go to the top of the page Help
Names
putative exported glycosyl hydrolase
YP_212698.1
  • Similar to Alteromonas sp. beta-N-acetylhexosaminidase Hex86 SWALL:Q8VUM1 (EMBL:AB067646) (761 aa) fasta scores: E(): 3.6e-78, 34.29% id in 726 aa, and to Vibrio furnissii beta-hexosaminidase ExoI SWALL:HEX1_VIBFU (SWALL:P96155) (611 aa) fasta scores: E(): 2.7e-52, 35.62% id in 494 aa

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003228.3 Reference assembly

    Range
    3590784..3593099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_212698.1 putative exported glycosyl hydrolase [Bacteroides fragilis NCTC 9343]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5LAU3.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.