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    MT1DP metallothionein 1D, pseudogene [ Homo sapiens ]

    Gene ID: 326343, updated on 11-May-2012
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    Summary

    Official Symbol
    MT1DPprovided by HGNC
    Official Full Name
    metallothionein 1D, pseudogeneprovided by HGNC
    Primary source
    HGNC:7396
    See related
    HPRD:17610
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MTM
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    Genomic context

    Location :
    16q13
    Sequence :
    Chromosome: 16; NC_000016.9 (56677599..56678853)
    See MT1DP in Epigenomics, MapViewer

    Chromosome 16 - NC_000016.9Genomic Context describing neighboring genes Neighboring gene metallothionein 1J, pseudogene Neighboring gene metallothionein 1A Neighboring gene metallothionein 1C, pseudogene Neighboring gene metallothionein 1B

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Systematic and quantitative assessment of the ubiquitin-modified proteome. Kim W, et al. Mol Cell, 2011 Oct 21. PMID 21906983.
    2. HIV-1 Tat reprograms immature dendritic cells to express chemoattractants for activated T cells and macrophages. Izmailova E, et al. Nat Med, 2003 Feb. PMID 12539042.
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932.
    4. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013.
    5. Structural and functional analysis of the human metallothionein-IA gene: differential induction by metal ions and glucocorticoids. Richards RI, et al. Cell, 1984 May. PMID 6327055.

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Phenotypes

    Review eQTL and phenotype association data in this region using PheGenI

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    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Tat tat Microarray analysis indicates HIV-1 Tat upregulates the interferon-responsive gene expression of many proteins, including Metallothionein, in immature dendritic cells, an effect that likely facilitates the expansion of HIV-1 infection PubMed

    Go to the HIV-1, Human Protein Interaction Database

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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:130579 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
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    General gene information

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
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    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003658.2 RNA Sequence

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC026461, BG181336

    2. NR_027781.1 RNA Sequence

      Description
      Transcript Variant: This variant (2) differs at the 5' end and is shorter compared to variant 1.
      Source sequence(s)
      AF348999, BC130317, BG181336

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000016.9 Reference GRCh37.p5 Primary Assembly

      Range
      56677599..56678853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000148.1 Alternate HuRef

      Range
      42547053..42548307
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_175620.1: Suppressed sequence

      Description
      NM_175620.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC026461.11 (42522..44085) None
    genomic CH471092.1 EAW82877.1
      EAW82878.1
    mRNA AF348999.2 AAO32959.2
    mRNA BC130315.1 None
    mRNA BC130317.1 None
    mRNA BG181336.1 None
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1L3X4.1 GenPept UniProtKB/Swiss-Prot:A1L3X4
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    Additional Links

    Gene LinkOut

      Supplemental Content