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ttpa tocopherol (alpha) transfer protein [ Danio rerio (zebrafish) ]

Gene ID: 325906, updated on 9-Apr-2014
Official Symbol
ttpaprovided by ZNC
Official Full Name
tocopherol (alpha) transfer proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4631
See related
Ensembl:ENSDARG00000027584; Vega:OTTDARG00000019744
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:66361; wu:fd44e05
See ttpa in MapViewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Zv9 (GCF_000002035.4) 2 NC_007113.5 (26795642..26801318)

Chromosome 2 - NC_007113.5Genomic Context describing neighboring genes Neighboring gene U2 snRNP-associated SURP domain containing Neighboring gene microRNA 124-1 Neighboring gene aspartate beta-hydroxylase Neighboring gene inositol(myo)-1(or 4)-monophosphatase 1

Genomic Sequence:
NC_007113.5 chromosome 2 reference Zv9 Primary Assembly

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
central nervous system development IMP
Inferred from Mutant Phenotype
more info
 
embryo development IMP
Inferred from Mutant Phenotype
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
intracellular IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
tocopherol (alpha) transfer protein
Names
tocopherol (alpha) transfer protein
tocopherol (alpha) transfer protein (ataxia (Friedreich-like) with vitamin E deficiency)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199731.2NP_956025.2  tocopherol (alpha) transfer protein

    Status: VALIDATED

    Source sequence(s)
    BX248497
    UniProtKB/TrEMBL
    B0S5J5
    Related
    ENSDARP00000117556, OTTDARP00000020137, ENSDART00000145415, OTTDART00000024383
    Conserved Domains (2) summary
    cd00170
    Location:92246
    Blast Score: 280
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    pfam03765
    Location:2670
    Blast Score: 119
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zv9 Primary Assembly

Genomic

  1. NC_007113.5 

    Range
    26795642..26801318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)