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    CG11727 [ Drosophila melanogaster ]

    Gene ID: 32088, updated on 10-May-2012
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    Summary

    Official Symbol
    CG11727provided by Flybase
    Primary source
    FLYBASE:FBgn0262740
    Locus tag
    Dmel_CG11727
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:GH08923; BcDNA:LD11130; Dmel\CG11727; MRE21
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    Genomic context

    Location :
    10B11-10B14
    Sequence :
    Chromosome: X; NC_004354.3 (11324559..11348335, complement)
    See CG11727 in Epigenomics, MapViewer

    Chromosome X - NC_004354.3Genomic Context describing neighboring genes Neighboring gene Odorant receptor 10a Neighboring gene Glutamine synthetase 2 Neighboring gene Sphingosine kinase 1 Neighboring gene Heterochromatin protein 5 Neighboring gene CG43155 gene product from transcript CG43155-RC

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila. Inagaki S, et al. Genes Cells, 2005 Dec. PMID 16324153.
    4. Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila. Landry CR, et al. Genetics, 2005 Dec. PMID 16143608.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (14) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:58499 BioGRID:64437 CG5280    BioGRID  PubMed Two-hybrid 
    BioGRID:58499 BioGRID:60686 Rab6    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

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    General protein information

    Preferred Names
    CG11727 gene product from transcript CG11727-RA
    Names
    CG11727
    CG11727-PA
    CG11727-PB
    CG11727-PC
    CG11727-PD
    mRNA-like ncRNA in embryogenesis 21
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.3

      Range
      11324559..11348335, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_167285.3 → NP_727526.2  CG11727, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VYY9
      Related
      FBpp0073392
      Conserved Domains (2) summary
      COG1196
      Location:410 – 769
      Blast Score: 120
      Smc; Chromosome segregation ATPases [Cell division and chromosome partitioning]
      cl02495
      Location:113 – 307
      Blast Score: 535
      RabGAP-TBC; Rab-GTPase-TBC domain

    2. NM_001169251.2 → NP_001162722.1  CG11727, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1JJH7
      Related
      FBpp0289957
      Conserved Domains (2) summary
      COG1196
      Location:410 – 763
      Blast Score: 121
      Smc; Chromosome segregation ATPases [Cell division and chromosome partitioning]
      cl02495
      Location:113 – 307
      Blast Score: 535
      RabGAP-TBC; Rab-GTPase-TBC domain

    3. NM_001169250.1 → NP_001162721.1  CG11727, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      C9QP48
      Related
      FBpp0289956, FBtr0300732
      Conserved Domains (2) summary
      COG1196
      Location:410 – 756
      Blast Score: 118
      Smc; Chromosome segregation ATPases [Cell division and chromosome partitioning]
      cl02495
      Location:113 – 307
      Blast Score: 534
      RabGAP-TBC; Rab-GTPase-TBC domain

    4. NM_132488.4 → NP_572716.3  CG11727, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VYY9
      Related
      FBpp0073391, FBtr0073546
      Conserved Domains (2) summary
      COG1196
      Location:410 – 762
      Blast Score: 118
      Smc; Chromosome segregation ATPases [Cell division and chromosome partitioning]
      cl02495
      Location:113 – 307
      Blast Score: 535
      RabGAP-TBC; Rab-GTPase-TBC domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014298.4 AAF48044.3
    genomic AE014298.4 ACZ95257.1
    mRNA BT099932.1 ACX36508.1
    genomic AE014298.4 ACZ95256.1
    mRNA BT099930.1 ACX36506.1
    genomic AE014298.4 AAN09633.2
    mRNA AY118309.1 AAM48338.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VYY9.3 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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