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dmdA dimethyl sulfoniopropionate (DMSP) demethylase [ Ruegeria pomeroyi DSS-3 ]

Gene ID: 3192947, discontinued on 1-Mar-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
dmdA
Gene description
dimethyl sulfoniopropionate (DMSP) demethylase
Locus tag
SPO1913
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ruegeria pomeroyi DSS-3 (strain: DSS-3)
Lineage
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003911.12

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Dimethylsulfoniopropionate-dependent demethylase (DmdA) was purified. It has strict substrate specificity for DMSP, and is likely to be a dimer.
    Title: Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi.
  2. Demethylates DMSP to MMPA.
    Title: Bacterial taxa that limit sulfur flux from the ocean.
Submit: New GeneRIF Correction

General protein information

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Preferred Names
dimethyl sulfoniopropionate (DMSP) demethylase
Names
DmdA
YP_167148.1
  • identified by match to protein family HMM PF01571

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003911.12 Reference assembly

    Range
    2033982..2035076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_167148.1 DmdA [Ruegeria pomeroyi DSS-3]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5LS57.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.