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    CG6999 [ Drosophila melanogaster ]

    Gene ID: 31837, updated on 9-May-2012
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    Summary

    Official Symbol
    CG6999provided by Flybase
    Primary source
    FLYBASE:FBgn0030085
    Locus tag
    Dmel_CG6999
    Gene type
    protein coding
    RNA name
    CG6999
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG6999
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    Genomic context

    Location :
    8C8-8C8
    Sequence :
    Chromosome: X; NC_004354.3 (8982400..8983347)
    See CG6999 in Epigenomics, MapViewer

    Chromosome X - NC_004354.3Genomic Context describing neighboring genes Neighboring gene CG32708 gene product from transcript CG32708-RA Neighboring gene CG32706 gene product from transcript CG32706-RA Neighboring gene CG7033 gene product from transcript CG7033-RA Neighboring gene mir-13b-2 stem loop Neighboring gene CG7766 gene product from transcript CG7766-RC

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Recurrent tandem gene duplication gave rise to functionally divergent genes in Drosophila. Fan C, et al. Mol Biol Evol, 2008 Jul. PMID 18408233.
    2. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    3. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    4. Sex-specific expression of alternative transcripts in Drosophila. McIntyre LM, et al. Genome Biol, 2006. PMID 16934145.
    5. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.

    See all (14) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:58292 BioGRID:72969 CG4747    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the CG6999 gene: The CG6999 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, zebrafish, mosquito, C.elegans, S.cerevisiae, K.lactis, , S.pombe, , N.crassa, A.thaliana, and rice.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    regulation of alternative nuclear mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    nucleus IC
    Inferred by Curator
    more info
    		 PubMed 
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    General protein information

    Preferred Names
    CG6999 gene product from transcript CG6999-RA
    Names
    CG6999
    CG6999-PA
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.3

      Range
      8982400..8983347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_132295.2 → NP_572523.1  CG6999 [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W393
      Related
      FBpp0071225, FBtr0071288
      Conserved Domains (1) summary
      cd00590
      Location:62 – 131
      Blast Score: 87
      RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AY752552.1 AAW31999.1
    genomic AY752553.1 AAW32000.1
    genomic AE014298.4 AAF46441.1
    genomic AY752554.1 AAW32001.1
    genomic AY752555.1 AAW32002.1
    genomic AY752558.1 AAW32004.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W393.1 GenPept
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    Additional Links

    Gene LinkOut

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