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    dapC succinyldiaminopimelate transaminase [ Aromatoleum aromaticum EbN1 ]

    Gene ID: 3180030, updated on 18-May-2013
    Gene symbol
    dapC
    Gene description
    succinyldiaminopimelate transaminase
    Locus tag
    ebA6385
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Aromatoleum aromaticum EbN1 (strain: EbN1, old-name: Azoarcus sp. EbN1)
    Lineage
    Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum
    Sequence :
    NC_006513.1 (3792111..3793307)

    NC_006513.1Genomic Context describing neighboring genes Neighboring gene NAD-dependent DNA ligase Neighboring gene ZipA-like protein Neighboring gene chromosome segregation ATPase Neighboring gene 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Substrate-dependent regulation of anaerobic degradation pathways for toluene and ethylbenzene in a denitrifying bacterium, strain EbN1. Kühner S, et al. J Bacteriol, 2005 Feb. PMID 15687214.
    2. The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1. Rabus R, et al. Arch Microbiol, 2005 Jan. PMID 15551059.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    succinyldiaminopimelate transaminase
    YP_160675.1
    • catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_006513.1

      Range
      3792111..3793307
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_160675.1 succinyldiaminopimelate transaminase [Aromatoleum aromaticum EbN1]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q5NYU0
      Conserved Domains (2) summary
      cd00609
      Location:32 – 392
      Blast Score: 648
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PRK09147
      Location:1 – 396
      Blast Score: 2081
      PRK09147; succinyldiaminopimelate transaminase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    genomic CR555306.1 CAI09774.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5NYU0.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

      Related sites

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