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Map7d2 MAP7 domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 317508, updated on 13-Apr-2024

Summary

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Official Symbol
Map7d2provided by RGD
Official Full Name
MAP7 domain containing 2provided by RGD
Primary source
RGD:1564852
See related
Ensembl:ENSRNOG00000005176 AllianceGenome:RGD:1564852
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Brelin; Mtap7d2; RGD1564852
Summary
Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAP7D2 (MAP7 domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 176.1), Testes (RPKM 77.4) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
Xq14
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (39181091..39296814, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (35372453..35488073, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (38400578..38467825, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene BCLAF1 and THRAP3 family member 3 Neighboring gene ribosomal protein S9, pseudogene 13 Neighboring gene eukaryotic translation initiation factor 1A, X-linked Neighboring gene ribosomal protein S6 kinase A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Interactome analysis of AMP-activated protein kinase (AMPK)-α1 and -β1 in INS-1 pancreatic beta-cells by affinity purification-mass spectrometry. Moon S, et al. Sci Rep, 2014 Mar 14. PMID 24625528, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
MAP7 domain-containing protein 2
Names
brain-enriched E-MAP-115-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289778.2 → NP_001276707.1  MAP7 domain-containing protein 2

    See identical proteins and their annotated locations for NP_001276707.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000021
    UniProtKB/TrEMBL
    D4A4L4, W0T3G7
    Related
    ENSRNOP00000042347.6, ENSRNOT00000045285.7
    Conserved Domains (2) summary
    pfam17380
    Location:57 → 150
    DUF5401; Family of unknown function (DUF5401)
    pfam05672
    Location:415 → 588
    MAP7; MAP7 (E-MAP-115) family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    39181091..39296814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039099843.2 → XP_038955771.1  MAP7 domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZJE8, A6IPN0
    Related
    ENSRNOP00000077197.1
    Conserved Domains (2) summary
    pfam17380
    Location:57 → 150
    DUF5401; Family of unknown function (DUF5401)
    pfam05672
    Location:382 → 555
    MAP7; MAP7 (E-MAP-115) family

  2. XM_039099844.2 → XP_038955772.1  MAP7 domain-containing protein 2 isoform X3

    Conserved Domains (2) summary
    pfam17380
    Location:57 → 150
    DUF5401; Family of unknown function (DUF5401)
    pfam05672
    Location:382 → 543
    MAP7; MAP7 (E-MAP-115) family

  3. XM_039099842.2 → XP_038955770.1  MAP7 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A4J6
    Related
    ENSRNOP00000086855.1
    Conserved Domains (2) summary
    pfam17380
    Location:57 → 150
    DUF5401; Family of unknown function (DUF5401)
    pfam05672
    Location:415 → 576
    MAP7; MAP7 (E-MAP-115) family
Nucleotide Protein Strain
Heading Accession and Version

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