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    Nf-YC Nuclear factor Y-box C [ Drosophila melanogaster ]

    Gene ID: 31622, updated on 10-May-2012
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    Summary

    Official Symbol
    Nf-YCprovided by Flybase
    Official Full Name
    Nuclear factor Y-box Cprovided by Flybase
    Primary source
    FLYBASE:FBgn0029905
    Locus tag
    Dmel_CG3075
    Gene type
    protein coding
    RNA name
    nuclear factor Y-box C
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG3075; Dmel\CG3075; nf-yc; NF-YC
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    Genomic context

    Location :
    6D3-6D3
    Sequence :
    Chromosome: X; NC_004354.3 (6712211..6714948, complement)
    See Nf-YC in Epigenomics, MapViewer

    Chromosome X - NC_004354.3Genomic Context describing neighboring genes Neighboring gene CG4532 gene product from transcript CG4532-RA Neighboring gene inactive Neighboring gene CG4542 gene product from transcript CG4542-RA Neighboring gene Ataxin 1

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate. Pospisilik JA, et al. Cell, 2010 Jan 8. PMID 20074523.
    2. Identification of the Drosophila Mes4 gene as a novel target of the transcription factor DREF. Suyari O, et al. Exp Cell Res, 2009 May 1. PMID 19150446.
    3. Coordinate control of synaptic-layer specificity and rhodopsins in photoreceptor neurons. Morey M, et al. Nature, 2008 Dec 11. PMID 18978774.
    4. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    5. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.

    See all (16) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:58107 BioGRID:64886 26-29-p    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:63011 Act57B    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:58020 Act5C    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:57628 CG11380    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:63807 CG13806    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:72487 CG17018    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:65869 CG31550    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:64492 CG32043    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:63230 CycB    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:64104 DnaJ-1    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:64484 Nf-YA    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:67407 Stat92E    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:64079 Uev1A    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:69548 cathD    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:57548 ewg    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:65450 hale    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:62642 mbl    BioGRID  PubMed Two-hybrid 
    BioGRID:58107 BioGRID:57646 ssx    BioGRID  PubMed Two-hybrid 
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    General gene information

    Homology

    • Homologs of the Nf-YC gene: The Nf-YC gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, and mosquito.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    contributes_to sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    sequence-specific DNA binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    cellular process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    regulation of smoothened signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		  
    wing disc pattern formation IMP
    Inferred from Mutant Phenotype
    more info
    		  
    Component Evidence Code Pubs
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
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    General protein information

    Preferred Names
    CG3075 gene product from transcript CG3075-RA
    Names
    CG3075-PA
    NF-YC-like
    Nf-YC-PA
    nuclear factor Y-box C
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.3

      Range
      6712211..6714948, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_132126.2 → NP_572354.1  nuclear factor Y-box C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W3V9
      Related
      FBpp0070935
      Conserved Domains (1) summary
      cl00074
      Location:154 – 216
      Blast Score: 194
      H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE014298.4 AAF46204.1
    mRNA BT001649.1 AAN71404.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W3V9.1 GenPept
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    Additional Links

    Gene LinkOut

      Supplemental Content