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Gtf2f1 general transcription factor IIF subunit 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 316123, updated on 17-May-2016
Official Symbol
Gtf2f1provided by RGD
Official Full Name
general transcription factor IIF subunit 1provided by RGD
Primary source
RGD:1359646
See related
Ensembl:ENSRNOG00000047134
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Orthologs
Location:
9q11
Exon count:
14
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (10032805..10042392)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 9 NC_005108.3 (9033464..9043042)

Chromosome 9 - NC_005108.4Genomic Context describing neighboring genes Neighboring gene solute carrier family 25, member 41 Neighboring gene KH-type splicing regulatory protein Neighboring gene adenylate kinase 5 Neighboring gene alkB homolog 7 Neighboring gene persephin

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC94148

Gene Ontology Provided by RGD

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
phosphatase activator activity IEA
Inferred from Electronic Annotation
more info
 
phosphatase activator activity ISO
Inferred from Sequence Orthology
more info
 
poly(A) RNA binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
transcription factor binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell junction ISO
Inferred from Sequence Orthology
more info
 
cellular_component ND
No biological Data available
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
general transcription factor IIF subunit 1
Names
TFIIF-alpha
general transcription factor IIF, polypeptide 1
general transcription factor IIF, polypeptide 1, 74kDa
transcription initiation factor IIF subunit alpha

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007711.1NP_001007712.1  general transcription factor IIF subunit 1

    See identical proteins and their annotated locations for NP_001007712.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079136
    UniProtKB/Swiss-Prot
    Q6AY96
    Related
    ENSRNOP00000064830, ENSRNOT00000073683
    Conserved Domains (2) summary
    cd00240
    Location:12172
    TFIIFa; Transcription initiation factor IIF, alpha subunit, N-terminal region of RAP74. Subunit of transcription initiation complex involved in initiation, elongation and promoter escape.Tetramer of 2 alpha and 2 beta TFIIF subunits interacts directly with RNA ...
    pfam05793
    Location:2508
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005108.4 Reference Rnor_6.0 Primary Assembly

    Range
    10032805..10042392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006244321.2XP_006244383.1  

    See identical proteins and their annotated locations for XP_006244383.1

    UniProtKB/Swiss-Prot
    Q6AY96
    Conserved Domains (2) summary
    cd00240
    Location:12172
    TFIIFa; Transcription initiation factor IIF, alpha subunit, N-terminal region of RAP74. Subunit of transcription initiation complex involved in initiation, elongation and promoter escape.Tetramer of 2 alpha and 2 beta TFIIF subunits interacts directly with RNA ...
    pfam05793
    Location:2508
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

Alternate Rn_Celera

Genomic

  1. AC_000077.1 Alternate Rn_Celera

    Range
    6664214..6673260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)