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    HMBS hydroxymethylbilane synthase [ Homo sapiens (human) ]

    Gene ID: 3145, updated on 18-May-2013
    Official Symbol
    HMBSprovided by HGNC
    Official Full Name
    hydroxymethylbilane synthaseprovided by HGNC
    Primary source
    HGNC:4982
    See related
    Ensembl:ENSG00000256269; HPRD:01440; MIM:609806; Vega:OTTHUMG00000168295
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    UPS; PBGD; PORC; PBG-D
    Summary
    This gene encodes a member of the hydroxymethylbilane synthase superfamily. The encoded protein is the third enzyme of the heme biosynthetic pathway and catalyzes the head to tail condensation of four porphobilinogen molecules into the linear hydroxymethylbilane. Mutations in this gene are associated with the autosomal dominant disease acute intermittent porphyria. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008]
    Location :
    11q23.3
    Sequence :
    Chromosome: 11; NC_000011.9 (118955587..118964259)
    See HMBS in Epigenomics, MapViewer

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene hypoxia up-regulated 1 Neighboring gene vacuolar protein sorting 11 homolog (S. cerevisiae) Neighboring gene H2A histone family, member X Neighboring gene dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Acute intermittent porphyria

    Summary from GeneReviews: Acute Intermittent Porphyria Go to GeneReviews

    Disease Characteristics
    Acute intermittent porphyria (referred to as AIP in this GeneReview) results from half-normal activity of the enzyme hydroxymethylbilane synthase (HMBS). It is characterized clinically by life-threatening acute neurovisceral attacks of severe abdominal pain without peritoneal signs, often accompanied by nausea, vomiting, tachycardia, and hypertension. Attacks may be complicated by neurologic findings (mental changes, convulsions, and peripheral neuropathy that may progress to respiratory paralysis), and hyponatremia. Acute attacks, which may be provoked by certain drugs, alcoholic beverages, endocrine factors, calorie restriction, stress, and infections, usually resolve within two weeks. Most individuals with AIP have one or a few attacks; about 5% (mainly women) have recurrent attacks (defined as >4 attacks/year) that may persist for years. Other long-term complications are chronic renal failure, hepatocellular carcinoma (HCC), and hypertension. Attacks, which are very rare before puberty, are more common in women than men. All individuals with a genetic change in the gene HMBS that predisposes to AIP are at risk of developing acute attacks; however, most never have symptoms and are said to have latent (or presymptomatic) AIP.
    Diagnosis Testing
    With one exception (5-aminolevulinate dehydratase deficiency [ALAD]), acute attacks of porphyria are associated with an increased urinary concentration of porphobilinogen (PBG). Demonstration that an increased PBG concentration is caused by AIP requires exclusion of other acute porphyrias by analysis of porphyrins in stool and plasma. Molecular genetic testing is used in a symptomatic individual to identify a mutation that can then be used to identify AIP in relatives of the proband. Assay of erythrocyte HMBS enzyme activity may be useful in families in which an HMBS mutation cannot be identified or when molecular testing is not available.
    Genetic Counseling
    AIP is inherited in an autosomal dominant manner. About 1% of probands may have a de novo mutation. Sibs and offspring of individuals with an HMBS mutation are at 50% risk of inheriting the HMBS mutation; however, because penetrance is low the likelihood of an individual with an inherited HMBS mutation having an acute attack is small. Prenatal testing is possible but is rarely requested because of the low clinical penetrance and favorable clinical outcome for the great majority of symptomatic adults.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    P08397 Q96S59 RANBP9    HPRD  PubMed  
    BioGRID:109388 BioGRID:106848 APP    BioGRID  PubMed Reconstituted Complex 
    BioGRID:109388 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    • Homologs of the HMBS gene: The HMBS gene is conserved in Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and rice.
    • Map Viewer (Mouse, Rat)

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    hydroxymethylbilane synthase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    hydroxymethylbilane synthase activity TAS
    Traceable Author Statement
    more info
     
    Process Evidence Code Pubs
    heme biosynthetic process IC
    Inferred by Curator
    more info
    PubMed 
    heme biosynthetic process TAS
    Traceable Author Statement
    more info
     
    peptidyl-pyrromethane cofactor linkage IEA
    Inferred from Electronic Annotation
    more info
     
    porphyrin-containing compound metabolic process TAS
    Traceable Author Statement
    more info
     
    protoporphyrinogen IX biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cytosol TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    porphobilinogen deaminase
    Names
    porphobilinogen deaminase
    uroporphyrinogen I synthase
    pre-uroporphyrinogen synthase
    uroporphyrinogen I synthetase
    porphyria, acute; Chester type
    NP_000181.2
    NP_001019553.1
    NP_001245137.1
    NP_001245138.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008093.1 RefSeqGene

      Range
      5001..13673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000190.3NP_000181.2  porphobilinogen deaminase isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AW139390, BC019323, CB128006
      Consensus CDS
      CCDS8409.1
      UniProtKB/Swiss-Prot
      P08397
      Related
      ENSP00000278715, OTTHUMP00000238530, ENST00000278715, OTTHUMT00000399188
      Conserved Domains (2) summary
      cd00494
      Location:21344
      Blast Score: 990
      HMBS; Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of ...
      PRK00072
      Location:18344
      Blast Score: 1079
      hemC; porphobilinogen deaminase; Reviewed
    2. NM_001024382.1NP_001019553.1  porphobilinogen deaminase isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) contains an alternate, in-frame exon in the 5' coding region and uses a downstream start codon, compared to variant 1. It encodes isoform 2, which has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      BC019323, BF210364, BQ020524, X04217
      Consensus CDS
      CCDS41726.1
      UniProtKB/Swiss-Prot
      P08397
      Related
      ENSP00000376584, ENST00000392841
      Conserved Domains (2) summary
      cd00494
      Location:4327
      Blast Score: 988
      HMBS; Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of ...
      PRK00072
      Location:1327
      Blast Score: 1076
      hemC; porphobilinogen deaminase; Reviewed
    3. NM_001258208.1NP_001245137.1  porphobilinogen deaminase isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AK131072, AW139390, CB128006
      Consensus CDS
      CCDS58186.1
      UniProtKB/TrEMBL
      G5EA58
      Related
      ENSP00000438424, OTTHUMP00000238537, ENST00000544387, OTTHUMT00000399195
      Conserved Domains (2) summary
      cd00494
      Location:21304
      Blast Score: 804
      HMBS; Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of ...
      PRK00072
      Location:18304
      Blast Score: 883
      hemC; porphobilinogen deaminase; Reviewed
    4. NM_001258209.1NP_001245138.1  porphobilinogen deaminase isoform 4

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) uses an alternate splice junction at the 3' end of the first exon and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (4) is shorter at the N-terminus and lacks an alternate internal segment compared to isoform 1.
      Source sequence(s)
      AK000628, AP003392, AW139390, CB128006
      Consensus CDS
      CCDS58187.1
      UniProtKB/TrEMBL
      G3V1P4
      Related
      ENSP00000443058, OTTHUMP00000238533, ENST00000542729, OTTHUMT00000399191
      Conserved Domains (2) summary
      cd00494
      Location:4287
      Blast Score: 803
      HMBS; Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of ...
      PRK00072
      Location:1287
      Blast Score: 880
      hemC; porphobilinogen deaminase; Reviewed

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 PATCHES

    Genomic

    1. NW_003871076.1 Reference GRCh37.p10 PATCHES

      Range
      106476..106756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p10 Primary Assembly

      Range
      118955587..118964259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      114895043..114903707
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018922.1 Alternate CHM1_1.0

      Range
      118820177..118828858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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