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Smc6 structural maintenance of chromosomes 6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 313961, updated on 17-May-2016
Official Symbol
Smc6provided by RGD
Official Full Name
structural maintenance of chromosomes 6provided by RGD
Primary source
RGD:1311214
See related
Ensembl:ENSRNOG00000004908
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Smc6l1
Orthologs
Location:
6q14
Exon count:
28
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (36941233..36995920)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 6 NC_005105.3 (46691346..46746033)

Chromosome 6 - NC_005105.4Genomic Context describing neighboring genes Neighboring gene mesogenin 1 Neighboring gene uncharacterized LOC102547959 Neighboring gene GEN1 Holliday junction 5' flap endonuclease Neighboring gene visinin-like 1 Neighboring gene similar to mitochondrial ribosomal protein S10

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 
ubiquitin protein ligase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cellular response to DNA damage stimulus ISO
Inferred from Sequence Orthology
more info
 
cellular senescence IEA
Inferred from Electronic Annotation
more info
 
cellular senescence ISO
Inferred from Sequence Orthology
more info
 
double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 
positive regulation of chromosome segregation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of chromosome segregation ISO
Inferred from Sequence Orthology
more info
 
resolution of recombination intermediates IEA
Inferred from Electronic Annotation
more info
 
telomere maintenance via recombination IEA
Inferred from Electronic Annotation
more info
 
telomere maintenance via recombination ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
PML body IEA
Inferred from Electronic Annotation
more info
 
PML body ISO
Inferred from Sequence Orthology
more info
 
Smc5-Smc6 complex IEA
Inferred from Electronic Annotation
more info
 
Smc5-Smc6 complex ISO
Inferred from Sequence Orthology
more info
 
chromosome, telomeric region IEA
Inferred from Electronic Annotation
more info
 
chromosome, telomeric region ISO
Inferred from Sequence Orthology
more info
 
interchromatin granule IEA
Inferred from Electronic Annotation
more info
 
interchromatin granule ISO
Inferred from Sequence Orthology
more info
 
intracellular ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
sex chromosome IEA
Inferred from Electronic Annotation
more info
 
sex chromosome ISO
Inferred from Sequence Orthology
more info
 
site of double-strand break IEA
Inferred from Electronic Annotation
more info
 
site of double-strand break ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
structural maintenance of chromosomes protein 6
Names
SMC6 structural maintenance of chromosomes 6-like 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108014.1NP_001101484.1  structural maintenance of chromosomes protein 6

    See identical proteins and their annotated locations for NP_001101484.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473947
    UniProtKB/TrEMBL
    D4AB26
    Related
    ENSRNOP00000007073, ENSRNOT00000007073
    Conserved Domains (3) summary
    cd03276
    Location:9831081
    ABC_SMC6_euk; ATP-binding cassette domain of eukaryotic SM6 proteins
    COG1196
    Location:541075
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl12013
    Location:291465
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005105.4 Reference Rnor_6.0 Primary Assembly

    Range
    36941233..36995920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006239898.2XP_006239960.1  

    See identical proteins and their annotated locations for XP_006239960.1

    UniProtKB/TrEMBL
    D4AB26
    Related
    ENSRNOP00000070408, ENSRNOT00000083383
    Conserved Domains (3) summary
    cd03276
    Location:9831081
    ABC_SMC6_euk; ATP-binding cassette domain of eukaryotic SM6 proteins
    COG1196
    Location:541075
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl12013
    Location:291465
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Alternate Rn_Celera

Genomic

  1. AC_000074.1 Alternate Rn_Celera

    Range
    33379218..33432201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)