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    Smc6 structural maintenance of chromosomes 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313961, updated on 19-May-2013
    Official Symbol
    Smc6provided by RGD
    Official Full Name
    structural maintenance of chromosomes 6provided by RGD
    Primary source
    RGD:1311214
    See related
    Ensembl:ENSRNOG00000004908
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Smc6l1
    Location :
    6q14
    Sequence :
    Chromosome: 6; NC_005105.3 (46691346..46744578)
    See Smc6 in MapViewer

    Chromosome 6 - NC_005105.3Genomic Context describing neighboring genes Neighboring gene mesogenin 1 Neighboring gene Gen endonuclease homolog 1 (Drosophila) Neighboring gene visinin-like 1 Neighboring gene similar to mitochondrial ribosomal protein S10

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    cellular senescence IEA
    Inferred from Electronic Annotation
    more info
     
    cellular senescence ISO
    Inferred from Sequence Orthology
    more info
     
    double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
     
    telomere maintenance via recombination IEA
    Inferred from Electronic Annotation
    more info
     
    telomere maintenance via recombination ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    PML body IEA
    Inferred from Electronic Annotation
    more info
     
    PML body ISO
    Inferred from Sequence Orthology
    more info
     
    Smc5-Smc6 complex IEA
    Inferred from Electronic Annotation
    more info
     
    Smc5-Smc6 complex ISO
    Inferred from Sequence Orthology
    more info
     
    chromosome, telomeric region IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome, telomeric region ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    structural maintenance of chromosomes protein 6
    Names
    structural maintenance of chromosomes protein 6
    SMC6 structural maintenance of chromosomes 6-like 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108014.1NP_001101484.1  structural maintenance of chromosomes protein 6

      Status: PROVISIONAL

      Source sequence(s)
      CH473947
      UniProtKB/TrEMBL
      D4AB26
      Related
      ENSRNOP00000007073, ENSRNOT00000007073
      Conserved Domains (3) summary
      COG1196
      Location:2211075
      Blast Score: 350
      Smc; Chromosome segregation ATPases [Cell division and chromosome partitioning]
      cd03276
      Location:9831081
      Blast Score: 397
      ABC_SMC6_euk; Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal ...
      cl09099
      Location:54210
      Blast Score: 260
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Build 5.1

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_5.0 Primary Assembly

    Genomic

    1. NC_005105.3 Reference Rnor_5.0 Primary Assembly

      Range
      46691346..46744578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000074.1 Alternate Rn_Celera

      Range
      33379218..33432201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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