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Atg4c autophagy related 4C, cysteine peptidase [ Rattus norvegicus (Norway rat) ]

Gene ID: 313391, updated on 26-May-2016
Official Symbol
Atg4cprovided by RGD
Official Full Name
autophagy related 4C, cysteine peptidaseprovided by RGD
Primary source
RGD:1598323
See related
Ensembl:ENSRNOG00000008767
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Orthologs
Location:
5q33
Exon count:
11
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (117862746..117931520)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (121801802..121868749)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis 7 Neighboring gene noelin-like Neighboring gene hypothetical LOC100366073 Neighboring gene uncharacterized LOC103692424 Neighboring gene hypothetical protein LOC685453 Neighboring gene uncharacterized LOC102556219

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
cysteine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
cysteine-type endopeptidase activity ISO
Inferred from Sequence Orthology
more info
 
molecular_function ND
No biological Data available
more info
 
peptidase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
C-terminal protein lipidation IBA
Inferred from Biological aspect of Ancestor
more info
 
autophagosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
autophagosome assembly ISO
Inferred from Sequence Orthology
more info
 
autophagy ISO
Inferred from Sequence Orthology
more info
 
biological_process ND
No biological Data available
more info
 
mitophagy IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleophagy IBA
Inferred from Biological aspect of Ancestor
more info
 
protein delipidation IBA
Inferred from Biological aspect of Ancestor
more info
 
protein processing IBA
Inferred from Biological aspect of Ancestor
more info
 
protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
proteolysis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular region ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
cysteine protease ATG4C
Names
ATG4 autophagy related 4 homolog C
autophagy-related 4C

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107948.1NP_001101418.1  cysteine protease ATG4C

    See identical proteins and their annotated locations for NP_001101418.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473998
    Related
    ENSRNOP00000011631, ENSRNOT00000011631
    Conserved Domains (1) summary
    pfam03416
    Location:73402
    Peptidase_C54; Peptidase family C54

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    117862746..117931520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    112422843..112490885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)