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Rngtt RNA guanylyltransferase and 5'-phosphatase [ Rattus norvegicus (Norway rat) ]

Gene ID: 313131, updated on 26-May-2016
Official Symbol
Rngttprovided by RGD
Official Full Name
RNA guanylyltransferase and 5'-phosphataseprovided by RGD
Primary source
RGD:1311410
See related
Ensembl:ENSRNOG00000007867
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Orthologs
Location:
5q21
Exon count:
18
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (48561325..48779214)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (53143335..53362344)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102556064 Neighboring gene proline-rich nuclear receptor coactivator 1 Neighboring gene eukaryotic initiation factor 4A-I pseudogene Neighboring gene uncharacterized LOC103692330 Neighboring gene uncharacterized LOC102556460 Neighboring gene uncharacterized LOC102556373

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
RNA guanylyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
mRNA guanylyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
mRNA guanylyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
molecular_function ND
No biological Data available
more info
 
polynucleotide 5'-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
triphosphatase activity IEA
Inferred from Electronic Annotation
more info
 
triphosphatase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
7-methylguanosine mRNA capping IEA
Inferred from Electronic Annotation
more info
 
7-methylguanosine mRNA capping ISO
Inferred from Sequence Orthology
more info
 
RNA processing ISO
Inferred from Sequence Orthology
more info
 
biological_process ND
No biological Data available
more info
 
peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
polynucleotide 5' dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
mRNA-capping enzyme
NP_001101393.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107923.2NP_001101393.1  mRNA-capping enzyme

    See identical proteins and their annotated locations for NP_001101393.1

    Status: VALIDATED

    Source sequence(s)
    AABR07047801, AABR07047802, AABR07047804
    UniProtKB/TrEMBL
    D3ZH30
    Related
    ENSRNOP00000010614, ENSRNOT00000010614
    Conserved Domains (3) summary
    cd07895
    Location:248461
    Adenylation_mRNA_capping; Adenylation domain of GTP-dependent mRNA capping enzymes
    pfam03919
    Location:463560
    mRNA_cap_C; mRNA capping enzyme, C-terminal domain
    cl21483
    Location:47143
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    48561325..48779214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006237990.2XP_006238052.1  

    Conserved Domains (3) summary
    cd07895
    Location:248461
    Adenylation_mRNA_capping; Adenylation domain of GTP-dependent mRNA capping enzymes
    pfam03919
    Location:463502
    mRNA_cap_C; mRNA capping enzyme, C-terminal domain
    cl21483
    Location:47143
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
  2. XM_006237991.2XP_006238053.1  

    Conserved Domains (3) summary
    cd07895
    Location:239452
    Adenylation_mRNA_capping; Adenylation domain of GTP-dependent mRNA capping enzymes
    pfam03919
    Location:454493
    mRNA_cap_C; mRNA capping enzyme, C-terminal domain
    cl21483
    Location:65134
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

RNA

  1. XR_592456.1 RNA Sequence

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    46464963..46671822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)