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Gapvd1 GTPase activating protein and VPS9 domains 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 311880, updated on 19-Jul-2014
Official Symbol
Gapvd1provided by RGD
Official Full Name
GTPase activating protein and VPS9 domains 1provided by RGD
Primary source
RGD:1307479
See related
Ensembl:ENSRNOG00000017925
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307479
See Gapvd1 in MapViewer
Location:
3p11
Exon count:
29
Annotation release Status Assembly Chr Location
104 current Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (19071797..19157428, complement)

Chromosome 3 - NC_005102.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102547525 Neighboring gene mitogen-activated protein kinase associated protein 1 Neighboring gene 40S ribosomal protein S7-like Neighboring gene heat shock protein 5 Neighboring gene Rab9 effector protein with kelch motifs

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
GTPase activating protein binding IEA
Inferred from Electronic Annotation
more info
 
GTPase activating protein binding ISO
Inferred from Sequence Orthology
more info
 
GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 
guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 
guanyl-nucleotide exchange factor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 
positive regulation of GTPase activity ISO
Inferred from Sequence Orthology
more info
 
regulation of protein transport IEA
Inferred from Electronic Annotation
more info
 
regulation of protein transport ISO
Inferred from Sequence Orthology
more info
 
regulation of small GTPase mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
intracellular IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
GTPase-activating protein and VPS9 domain-containing protein 1
Names
GTPase activating protein and VPS9 domains 1
GTPase-activating protein and VPS9 domain-containing protein 1

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_5.0 Primary Assembly

Genomic

  1. NC_005102.3 

    Range
    19071797..19157428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_231161.8XP_231161.6  

    See proteins identical to XP_231161.6

    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1511
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13321433
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  2. XM_006234025.1XP_006234087.1  

    See proteins identical to XP_006234087.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1512
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13801481
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  3. XM_006234029.1XP_006234091.1  

    See proteins identical to XP_006234091.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1511
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13261427
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  4. XM_006234028.1XP_006234090.1  

    See proteins identical to XP_006234090.1

    UniProtKB/TrEMBL
    D3ZBJ3
    Related
    ENSRNOP00000024599, ENSRNOT00000024599
    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1512
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13531454
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  5. XM_006234026.1XP_006234088.1  

    See proteins identical to XP_006234088.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1512
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13801481
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  6. XM_006234027.1XP_006234089.1  

    See proteins identical to XP_006234089.1

    Related
    ENSRNOP00000063504, ENSRNOT00000066961
    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1512
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13801481
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

Alternate Rn_Celera

Genomic

  1. AC_000071.1 

    Range
    12689639..12776208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001078902.4XP_001078902.3  

    See proteins identical to XP_001078902.3

    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1511
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13321433
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  2. XM_006224367.1XP_006224429.1  

    See proteins identical to XP_006224429.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1512
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13801481
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  3. XM_006224371.1XP_006224433.1  

    See proteins identical to XP_006224433.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1511
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13261427
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  4. XM_006224370.1XP_006224432.1  

    See proteins identical to XP_006224432.1

    UniProtKB/TrEMBL
    D3ZBJ3
    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1512
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13531454
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  5. XM_006224368.1XP_006224430.1  

    See proteins identical to XP_006224430.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1512
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13801481
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  6. XM_006224369.1XP_006224431.1  

    See proteins identical to XP_006224431.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    Blast Score: 1512
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13801481
    Blast Score: 341
    VPS9; Vacuolar sorting protein 9 (VPS9) domain