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Gapvd1 GTPase activating protein and VPS9 domains 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 311880, updated on 30-Oct-2014
Official Symbol
Gapvd1provided by RGD
Official Full Name
GTPase activating protein and VPS9 domains 1provided by RGD
Primary source
RGD:1307479
See related
Ensembl:ENSRNOG00000017925
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307479
See Gapvd1 in MapViewer
Location:
3p11
Exon count:
27
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (13751572..13824874, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (19071797..19157428, complement)

Chromosome 3 - NC_005102.4Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase associated protein 1 Neighboring gene 40S ribosomal protein S7-like Neighboring gene uncharacterized LOC103691769 Neighboring gene mitogen-activated protein kinase 7-like Neighboring gene heat shock protein 5 Neighboring gene Rab9 effector protein with kelch motifs

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
GTPase activating protein binding IEA
Inferred from Electronic Annotation
more info
 
GTPase activating protein binding ISO
Inferred from Sequence Orthology
more info
 
GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 
guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 
guanyl-nucleotide exchange factor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 
positive regulation of GTPase activity ISO
Inferred from Sequence Orthology
more info
 
regulation of protein transport IEA
Inferred from Electronic Annotation
more info
 
regulation of protein transport ISO
Inferred from Sequence Orthology
more info
 
regulation of small GTPase mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
intracellular IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
GTPase-activating protein and VPS9 domain-containing protein 1
Names
GTPase activating protein and VPS9 domains 1
GTPase-activating protein and VPS9 domain-containing protein 1

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005102.4 

    Range
    13751572..13824874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008761797.1XP_008760019.1  

    See proteins identical to XP_008760019.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13051406
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  2. XM_008761795.1XP_008760017.1  

    See proteins identical to XP_008760017.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13321433
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  3. XM_008761796.1XP_008760018.1  

    See proteins identical to XP_008760018.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13261427
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  4. XM_008761793.1XP_008760015.1  

    See proteins identical to XP_008760015.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13531454
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  5. XM_008761792.1XP_008760014.1  

    See proteins identical to XP_008760014.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13591460
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  6. XM_008761794.1XP_008760016.1  

    See proteins identical to XP_008760016.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13531454
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  7. XM_006234027.2XP_006234089.1  

    See proteins identical to XP_006234089.1

    Related
    ENSRNOP00000063504
    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13801481
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

Alternate Rn_Celera

Genomic

  1. AC_000071.1 

    Range
    12689639..12763054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008775333.1XP_008773555.1  

    See proteins identical to XP_008773555.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13051406
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  2. XM_008775331.1XP_008773553.1  

    See proteins identical to XP_008773553.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13321433
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  3. XM_008775332.1XP_008773554.1  

    See proteins identical to XP_008773554.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13261427
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  4. XM_008775329.1XP_008773551.1  

    See proteins identical to XP_008773551.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13531454
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  5. XM_008775328.1XP_008773550.1  

    See proteins identical to XP_008773550.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13591460
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  6. XM_008775330.1XP_008773552.1  

    See proteins identical to XP_008773552.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13531454
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  7. XM_006224369.2XP_006224431.1  

    See proteins identical to XP_006224431.1

    Conserved Domains (2) summary
    cd05129
    Location:84449
    RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
    pfam02204
    Location:13801481
    VPS9; Vacuolar sorting protein 9 (VPS9) domain