Format

Send to:

Choose Destination

Clp1 cleavage and polyadenylation factor I subunit 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 311166, updated on 26-May-2016
Official Symbol
Clp1provided by RGD
Official Full Name
cleavage and polyadenylation factor I subunit 1provided by RGD
Primary source
RGD:1307679
See related
Ensembl:ENSRNOG00000007416
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Heab; RGD1307679
Orthologs
Location:
3q24
Exon count:
3
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (72125269..72129508, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (78645908..78657782, complement)

Chromosome 3 - NC_005102.4Genomic Context describing neighboring genes Neighboring gene thioredoxin-related transmembrane protein 2 Neighboring gene mediator complex subunit 19 Neighboring gene zinc finger, DHHC-type containing 5 Neighboring gene yippee-like 4 Neighboring gene microRNA 130a Neighboring gene microRNA 3590

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC94928

Gene Ontology Provided by RGD

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity IEA
Inferred from Electronic Annotation
more info
 
ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity ISO
Inferred from Sequence Orthology
more info
 
ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
molecular_function ND
No biological Data available
more info
 
polydeoxyribonucleotide kinase activity ISO
Inferred from Sequence Orthology
more info
 
polydeoxyribonucleotide kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
polynucleotide 5'-hydroxyl-kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
cerebellar cortex development ISO
Inferred from Sequence Orthology
more info
 
cerebellar cortex development ISS
Inferred from Sequence or Structural Similarity
more info
 
mRNA cleavage IBA
Inferred from Biological aspect of Ancestor
more info
 
mRNA polyadenylation IBA
Inferred from Biological aspect of Ancestor
more info
 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
siRNA loading onto RISC involved in RNA interference ISO
Inferred from Sequence Orthology
more info
 
siRNA loading onto RISC involved in RNA interference ISS
Inferred from Sequence or Structural Similarity
more info
 
tRNA splicing, via endonucleolytic cleavage and ligation IBA
Inferred from Biological aspect of Ancestor
more info
 
tRNA splicing, via endonucleolytic cleavage and ligation ISO
Inferred from Sequence Orthology
more info
 
tRNA splicing, via endonucleolytic cleavage and ligation ISS
Inferred from Sequence or Structural Similarity
more info
 
targeting of mRNA for destruction involved in RNA interference ISO
Inferred from Sequence Orthology
more info
 
targeting of mRNA for destruction involved in RNA interference ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
tRNA-intron endonuclease complex ISO
Inferred from Sequence Orthology
more info
 
tRNA-intron endonuclease complex ISS
Inferred from Sequence or Structural Similarity
more info
 
Preferred Names
polyribonucleotide 5'-hydroxyl-kinase Clp1
Names
ATP/GTP-binding protein
CLP1, cleavage and polyadenylation factor I subunit, homolog
polyadenylation factor Clp1
polynucleotide kinase Clp1
pre-mRNA cleavage complex II protein Clp1
NP_001009599.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009599.1NP_001009599.1  polyribonucleotide 5'-hydroxyl-kinase Clp1

    See identical proteins and their annotated locations for NP_001009599.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087130
    UniProtKB/Swiss-Prot
    Q5PQL4
    Related
    ENSRNOP00000009726, ENSRNOT00000009726
    Conserved Domains (3) summary
    COG5623
    Location:14423
    CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
    pfam03205
    Location:115230
    MobB; Molybdopterin guanine dinucleotide synthesis protein B
    pfam06807
    Location:232423
    Clp1; Pre-mRNA cleavage complex II protein Clp1

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005102.4 Reference Rnor_6.0 Primary Assembly

    Range
    72125269..72129508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006234461.2XP_006234523.1  

    Conserved Domains (3) summary
    COG5623
    Location:107516
    CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
    pfam03205
    Location:208323
    MobB; Molybdopterin guanine dinucleotide synthesis protein B
    pfam06807
    Location:325516
    Clp1; Pre-mRNA cleavage complex II protein Clp1
  2. XM_006234462.1XP_006234524.1  

    See identical proteins and their annotated locations for XP_006234524.1

    UniProtKB/Swiss-Prot
    Q5PQL4
    Conserved Domains (3) summary
    COG5623
    Location:14423
    CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
    pfam03205
    Location:115230
    MobB; Molybdopterin guanine dinucleotide synthesis protein B
    pfam06807
    Location:232423
    Clp1; Pre-mRNA cleavage complex II protein Clp1

Alternate Rn_Celera

Genomic

  1. AC_000071.1 Alternate Rn_Celera

    Range
    69162457..69166161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)