My NCBISign In

Display Settings:

Format

Send to:

Choose Destination

    potF putrescine ABC transporter binding exported protein [ Burkholderia pseudomallei K96243 ]

    Gene ID: 3095748, updated on 4-Feb-2012
    Help top of page

    Summary

    Gene symbol
    potF
    Gene description
    putrescine ABC transporter binding exported protein
    Locus tag
    BPSS0467
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Burkholderia pseudomallei K96243 (strain: K96243)
    Lineage
    Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group
    Help top of page

    Genomic context

    Sequence :
    Chromosome: 2; NC_006351.1 (636535..637656, complement)

    Chromosome 2 - NC_006351.1Genomic Context describing neighboring genes Neighboring gene putrescine transport system permease Neighboring gene putrescine ABC transport system, permease Neighboring gene putrescine ABC transporter ATP-binding protein Neighboring gene aminotransferase Neighboring gene glutamine synthetase

    Help top of page

    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
    Helptop of page

    Bibliography

    Related articles in PubMed

    1. Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Holden MT, et al. Proc Natl Acad Sci U S A, 2004 Sep 28. PMID 15377794.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Help top of page

    General gene information

    Pathways from BioSystems

    • ABC transporters, organism-specific biosystem (from KEGG)
      ABC transporters, organism-specific biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
    • ABC transporters, conserved biosystem (from KEGG)
      ABC transporters, conserved biosystemThe ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of ...
    • Putrescine transport system, organism-specific biosystem (from KEGG)
      Putrescine transport system, organism-specific biosystemStructural complex; Environmental information processing; Mineral and organic ion transport system

    Miscellaneous features

    • Loc: c637548-636544 Pfam match to entry PF01547 SBP_bac_1, Bacterial extracellular solute-binding protein , score 86.5, E-value 3.6e-23
    Help top of page

    General protein information

    Names
    putrescine ABC transporter binding exported protein
    YP_110489.1
    • Similar to Escherichia coli putrescine-binding periplasmic protein precursor PotF or b0854 SWALL:POTF_ECOLI (SWALL:P31133) (370 aa) fasta scores: E(): 3.3e-67, 49.3% id in 357 aa, and to Pseudomonas aeruginosa polyamine transport protein pa0301 SWALL:Q9I6J0 (EMBL:AE004468) (365 aa) fasta scores: E(): 6.3e-69, 49.59% id in 367 aa. Possible alternative translational start site
    Help top of page

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_006351.1

      Range
      636535..637656, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_110489.1 potF gene product [Burkholderia pseudomallei K96243]

      UniProtKB/TrEMBL
      Q63N30
      Conserved Domains (2) summary
      PRK10682
      Location:36 – 372
      Blast Score: 1036
      PRK10682; putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
      cl11398
      Location:83 – 324
      Blast Score: 184
      PBP2_LTTR_substrate; The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily.
    Help top of page

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BX571966.1 CAH37923.1
    Help top of page

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...